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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.003G132000.1 |
Common Name | POPTR_0003s13190g |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
MYB |
Protein Properties |
Length: 312aa MW: 35023.2 Da PI: 5.7262 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.003G132000.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 54.7 | 2.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
Potri.003G132000.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
788*******************************************97 PP
|
2 | Myb_DNA-binding | 53.3 | 6.5e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rgr+T+eE++l++ ++ G++ W+ Ia++++ gRt++++k++w+++
Potri.003G132000.1 67 RGRFTPEEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
89********************.*********.************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPS 120 APATITNATT STDHSNINYT SNQLDLGHQD LTRPQVQETL FSSSAPLFMF DTSTASLDGI 180 VDSSVRGELF HDSASLNTET WNSSQHHHVQ AVLPPQATFS IGMDTNYLPP LIDNMENMVP 240 IEMQSCSMND EGEISLECLQ RQELNIEWVE SQQCSNFLFW DNVEGPLGGE EIAPTSSSMG 300 AATLSSFPSS L*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KP770011 | 0.0 | KP770011.1 UNVERIFIED: Populus tomentosa NAC domain transcription factor-like (Potri.003G132000) mRNA, complete sequence. |