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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G131300.1 | ||||||||
Common Name | POPTR_0003s13120g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TALE | ||||||||
Protein Properties | Length: 665aa MW: 74280.6 Da PI: 6.7733 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.9 | 8.4e-09 | 428 | 465 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Potri.003G131300.1 428 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 465 554458******************************88 PP | |||||||
2 | BELL | 114.8 | 4.4e-37 | 290 | 360 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + elqk+k+k+ls+leeVd+rY++y++q++t++ssFeavag g+a +Y +lA+ka+SrhFrcL+d i+ qi Potri.003G131300.1 290 FIELQKRKTKMLSMLEEVDRRYRHYCDQMKTMVSSFEAVAGTGAASVYSALASKAMSRHFRCLRDGIVAQI 360 689******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.3E-56 | 228 | 358 | IPR006563 | POX domain |
Pfam | PF07526 | 2.8E-45 | 234 | 356 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.034 | 406 | 469 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.26E-11 | 409 | 470 | No hit | No description |
SMART | SM00389 | 1.1E-8 | 409 | 473 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.07E-16 | 410 | 475 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-27 | 412 | 475 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.9E-18 | 426 | 465 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MAREPCEDKS RNMVSSGSFC YPDVSSSNPT IQTHLVNQIQ GYESNPEIFN LTTGMEMIGF 60 SKNLQHQQSD SNSVMWKGFF NKPANNHHPG GPSSSKTIHE STSGDFYQHE FSKPDFSTGI 120 SEASNENLMV GADHSAPWQE NRLLVDDSSL TCVFPCEGNE RPSQGLSLSL CPSNPSSIGL 180 HSFELRHTPT HQNQDNSQEE MRFFGKSPAN IQQQMMQDGF LKAANLHHQA QFQLRNSKYL 240 GPAQDLLNEF CNIRTKQGDA LKQKPHKPKQ LDDDQNGSSS RKQSLESLEF IELQKRKTKM 300 LSMLEEVDRR YRHYCDQMKT MVSSFEAVAG TGAASVYSAL ASKAMSRHFR CLRDGIVAQI 360 HATKKAMGEK DPVAPGTTKG ETPRLKILDQ ALRQQRAFQQ MSMMESHPWR PQRGLPERSV 420 SFLRAWLFEH FLHPYPSDVD KHILARQTGL SRSQVSNWFI NARVRLWKPM VEEMYLEETK 480 EQDKNMASSD GVTDLDENIN GRPNQNPSST DQKPTPDHLI RIDSECLSSI ISNPDKNGTN 540 KSTISFQSHH LQHQQQSFGN FGSMDLDFSS YNHHAAGGVS YANDSASNQN FNGGGGVSLT 600 LGLQQHGGSG VSLAFSPASQ SSLFYPRDHI EDCQPVQYSL LDGEGQNLPY RNLMGAQLLH 660 DMAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 6e-15 | 415 | 473 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 6e-15 | 415 | 473 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G131300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT029292 | 1e-142 | CT029292.1 Poplar cDNA sequences. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006385771.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_006385773.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_024452162.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-147 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | U5GJA2 | 0.0 | U5GJA2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s13120.2 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4650 | 20 | 30 | Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-145 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G131300.1 |
Entrez Gene | 18097045 |
Publications ? help Back to Top | |||
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