PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G123800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 426aa    MW: 47962 Da    PI: 8.3824
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G123800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94e-1769115148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT+eEd+ + ++v ++G + W+ Ia+ ++ gR +kqc++rw+++l
  Potri.003G123800.1  69 KGTWTKEEDDCIMELVGKHGCRKWSVIAKSLP-GRVGKQCRERWFNHL 115
                         799*****************************.*************97 PP
2Myb_DNA-binding45.22.1e-14121164146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r +WT+eE+  l  + + +G++ W++Iar ++ gR+++ +k++w+ 
  Potri.003G123800.1 121 RAPWTKEEEMTLTYYREIYGNK-WAKIARFLP-GRSDNAIKNYWNC 164
                         569*******************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-104479IPR009057Homeodomain-like
PROSITE profilePS5129428.20164119IPR017930Myb domain
SuperFamilySSF466896.25E-3067162IPR009057Homeodomain-like
SMARTSM007172.8E-1368117IPR001005SANT/Myb domain
PfamPF002491.1E-1669115IPR001005SANT/Myb domain
CDDcd001675.81E-1371115No hitNo description
Gene3DG3DSA:1.10.10.604.5E-2680121IPR009057Homeodomain-like
SMARTSM007176.7E-16120168IPR001005SANT/Myb domain
PROSITE profilePS5129415.805120170IPR017930Myb domain
PfamPF002495.2E-12121163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-21122170IPR009057Homeodomain-like
CDDcd001673.65E-12123166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
YLLKKAILLN YLCSLMCHCA SIYMCRTSIV SEANEMINFV SCTAECLPGR TVSQCFCRWD  60
RVLNPAIVKG TWTKEEDDCI MELVGKHGCR KWSVIAKSLP GRVGKQCRER WFNHLNPTIN  120
RAPWTKEEEM TLTYYREIYG NKWAKIARFL PGRSDNAIKN YWNCVLKKNL DSYSLHGCTM  180
DLFTVSSPSS YNCAAELNCL KLKESQSVEK AAFVYENMEL RCSAEMSASG SAKANGIGKK  240
NEVRKLHMQA EETSQNCLHH ESQQLSTLVC NLDAGEVPSM DTCVMHPISP FCCSTPTKYA  300
RSISVNSTSP ESILRNSART FKNTPSIIRK RALRGAAIAK ISDVTCTPSS KFSCPDDFQI  360
VDSTNSPNEK QGFLRYFQPE TSFAIKSLKR HFDYAFDMEK EADLGKCGKS VSLSEPLHQN  420
FLESR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-474117030159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-474117030159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G123800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304479.30.0transcription factor MYB3R-3
TrEMBLA0A3N7G6W90.0A0A3N7G6W9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s12390.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.12e-56Homeodomain-like protein