PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 177aa MW: 18835.2 Da PI: 4.7978

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G121200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.7	3.9e-15	14	61	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +++g+Wv+eIr+p++ ++r++lg+f +e+Aa+a++ a ++l+g Potri.003G121200.1 14 YRGIR--SRSGKWVSEIREPRK---TTRIWLGTFPKPEMAAAAYDVAVLALKG 61 996..678*****843...5********************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.37E-17	13	71	IPR016177	DNA-binding domain
SMART	SM00380	1.8E-26	13	77	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.1E-26	13	70	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.73	13	69	IPR001471	AP2/ERF domain
Pfam	PF00847	8.0E-8	14	61	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-6	14	25	IPR001471	AP2/ERF domain
CDD	cd00018	5.11E-27	14	71	No hit	No description
PRINTS	PR00367	2.8E-6	51	71	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MATTSSSSKR HPMYRGIRSR SGKWVSEIRE PRKTTRIWLG TFPKPEMAAA AYDVAVLALK 60 GADAVLNFPS SVGTYPVPAS TSPTDIRNAA NAAAALKKAE MSYNEALVEQ PRNDCAVGTF 120 LASGGEEFVD EEALFDMPNL LVDMAGGMLL SPPRITPSPS DDSQGTSDGE SLWSYS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00558	DAP	Transfer from AT5G52020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G121200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024453070.1	1e-127	ethylene-responsive transcription factor ERF027
Swissprot	Q9FJ90	2e-50	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	B9GW61	1e-125	B9GW61_POPTR; Uncharacterized protein
STRING	POPTR_0003s12120.1	1e-126	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF562	32	144
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	1e-46	ERF family protein

Link Out ? help Back to Top
Phytozome	Potri.003G121200.1
Entrez Gene	7479256

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]