 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.003G118600.1 |
| Common Name | POPTR_0003s11850g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
Trihelix |
| Protein Properties |
Length: 291aa MW: 32978 Da PI: 5.8031 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.003G118600.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 47.3 | 5.3e-15 | 27 | 118 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+++ + +L++a ++ +l+rg+l++++W++v++++ + ++ r+ +qCk++++ ++k+yk +k + + + + +s++p+f++l+
Potri.003G118600.1 27 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTYRTDVQCKNRIDTIKKKYKIEKSHVVSSNGTLTSSWPFFERLD 117
7**************************************9999999999***********************99998888999******98 PP
trihelix 87 a 87
a
Potri.003G118600.1 118 A 118
5 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 291 aa
Download sequence Send
to blast |
MGDLIESSSV TPSTTPHSRP LPIREDCWSE EATSTLVDAW GRRYLELNRG NLRQKDWQDV 60
ADAVNALHGH TKKTYRTDVQ CKNRIDTIKK KYKIEKSHVV SSNGTLTSSW PFFERLDALI 120
GSNFNSSGKK HLSPSPPVAL PLPPSYRRTP QVSSTPPPQP PALAVALPQK RPLPVDDDYF 180
RRNYSAMAAA AAAVESDSEE DEDEEFEGGE RERAEEDVEG EGIKRLALAI ERFGEVYERV 240
ESEKLKQMVD LEKQRMKFAK DLEMERMRIF TETQVQLEKI KKGKRAPEDY *
|
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT3G58630.1 | 2e-40 | sequence-specific DNA binding transcription factors |
