PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G106500.4
Common NamePOPTR_0003s10570g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family BES1
Protein Properties Length: 623aa    MW: 70173.8 Da    PI: 6.0999
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G106500.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822143.42e-44731972134
              DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspes 92 
                         g+g+++++kE+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+Vl+AL+reAGw+ve DGttyr++  p     ++gs+  + +es
  Potri.003G106500.4  73 GKGKREREKEKERTKLRERHRRAITSRMLTGLRQYGNFPLPARADMNDVLAALAREAGWTVETDGTTYRQSPPPS----HTGSFGVRPVES 159
                         899******************************************************************776555....889998888888 PP

              DUF822  93 slqsslkssalaspvesysaspksssfpspssldsislasa..a 134
                         +l    k++a++   e + ++++ ++++sp slds+ +++   +
  Potri.003G106500.4 160 PLL---KNCAVK---ECQPSVLRIDESLSPGSLDSMVISERenS 197
                         866...666655...45667788999999999999999877441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056879.8E-4573210IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514459.66E-143233600IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.805.3E-157235594IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.4E-76260593IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.2E-48273287IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.2E-48294312IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.2E-48316337IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.2E-48409431IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.2E-48482501IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.2E-48516532IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.2E-48533544IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.2E-48551574IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MNTNNSNQDL LINPQQTQIP QPDPYSHLPH PVQPGPSPHP HPQTRRPRGF AATAAAAASA  60
DNTSAVSSPN ASGKGKRERE KEKERTKLRE RHRRAITSRM LTGLRQYGNF PLPARADMND  120
VLAALAREAG WTVETDGTTY RQSPPPSHTG SFGVRPVESP LLKNCAVKEC QPSVLRIDES  180
LSPGSLDSMV ISERENSRNE KYTSTSPINS VIECLDADQL IQDVHSGMHQ NDFTENSYVP  240
VYVMLANGFI NNCCQLIDPQ GVRQELSHMK SLDVDGVVVE CWWGVVEAWS PQKYAWSGYR  300
ELFNIIQEFK LKLQVVMAFH EYGGTDSGDV LISLPQWVLE IGKDNQDIFF TDREGRRNTE  360
CLSWGIDKER VLKGRTGIEV YFDFMRSFRT EFNDLFTEGL ITAIEIGLGP SGELKYPSFS  420
ERIGWRYPGI GEFQCYDKYS QQNLRKAAKL RGHSFWARGP DNAGQYNSRP HETGFFCERG  480
DYDSYFGRFF LHWYSQSLID HADNVLSLAS FAFEDTKIII KVPAVYWWYR TASHAAELTA  540
GYYNPTNQDG YSPVFEVLKK HSVIMKFVCS GLPLSGFEND EALVDPEGLS WQVMLFVGSL  600
NLVYSSGYLV SWIFLATFGS CS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-11623756910343Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G106500.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304400.20.0beta-amylase 8 isoform X2
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A2K2B4Z10.0A0A2K2B4Z1_POPTR; Beta-amylase
STRINGPOPTR_0003s10570.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]