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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.003G094200.1 |
| Common Name | POPTR_0003s09300g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
MYB |
| Protein Properties |
Length: 336aa MW: 37486 Da PI: 6.949 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.003G094200.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 57.6 | 2.9e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ede+l+d++k+ G ++Wk+ + g++R++k+c++rw +yl
Potri.003G094200.1 15 KGPWTPDEDEKLIDYIKRNGHENWKALPMLAGLNRCGKSCRLRWTNYL 62
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 53.2 | 6.9e-17 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++++eE+ +v+++ lG++ W++Ia++++ gRt++++k++w+++
Potri.003G094200.1 68 RGKFSEEEERVIVNLHSALGNK-WSRIANHLP-GRTDNEIKNFWNTH 112
89********************.*********.************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MVRSPCSPGA SALKKGPWTP DEDEKLIDYI KRNGHENWKA LPMLAGLNRC GKSCRLRWTN 60
YLRPDIKRGK FSEEEERVIV NLHSALGNKW SRIANHLPGR TDNEIKNFWN THIRKKLLQM 120
GIDPNTHKPR TDLSHFLNLS QLLGAAQFGN IASPWNNFLK LQAEATQLAN IQLLRNLLQM 180
MNTNTLTNIE SNSLLGSQNP HQFRGLVNGT TISNTNEPTT ISQDLVNPPV TPQVHNDFQA 240
ISKLWASCEG GFGPEGLNIN GDTLSSSYGI QTEQNPLPAL VSASTSPVTS IDYQTERKGD 300
PSNYSTGTPT STIFEAWEKL IDDDNYSSYW NDILE*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
