PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G093200.2
Common NamePOPTR_0003s09200g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 291aa    MW: 32633.7 Da    PI: 10.1466
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G093200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-1299149154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k++
  Potri.003G093200.2  99 QRMTHIAVERNRRKLMNEHLAVLRSLMPES---YVRRGDQASIVGGAIEFVKEM 149
                         79****************************...9*****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-1597169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.45E-1197154No hitNo description
PROSITE profilePS5088814.27898149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1399167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-1099149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-9104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MALQALSSNE FLNFILYDTI SATPCSSHAS LETTSLLLEN LIPQDHGVSV NSSSLMTGQR  60
CSMGREAVIR RHNLLAVQGK KKRRRKPRVC KNREDAETQR MTHIAVERNR RKLMNEHLAV  120
LRSLMPESYV RRGDQASIVG GAIEFVKEME HFLQSLEAKK LKLKQELTGP NYSAENATTT  180
SEFPQPPFSQ FFVSPQYTWS QIPSKFTSKT AASIADIEAT LIETHANLRI LSRRSPRQLS  240
KLVSGFHTLY LTVLHINVTT MDPLVLYSIS AKVCTVKITC TIVCTILRIN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17984KKKRRR
27985KKKRRRK
37986KKKRRRKP
48085KKRRRK
599110RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.118720.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G093200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385664.20.0transcription factor bHLH71
SwissprotQ9C7T41e-60BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2K2B4790.0A0A2K2B479_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09200.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]