PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G087700.2
Common NamePOPTR_0003s08600g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 421aa    MW: 46970.1 Da    PI: 6.5539
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G087700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.83.6e-26288341155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k +++WtpeLH++Fv++ve+L G ++A+P+++lelmkv++Lt+++v+SHLQkYR+
  Potri.003G087700.2 288 KMKVDWTPELHKKFVQVVEKL-GVDQAIPSRVLELMKVESLTRHNVASHLQKYRM 341
                         5689*****************.********************************7 PP
2Response_reg26.53.1e-10201261109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+ d++++ +  +++ le  +y +v ++ +  eal  + ++   +++ ++ ++ ++++G+  +k +++++ +lp i+ +     +++ ++
  Potri.003G087700.2  20 VLLLDEDNSSAAEIKSKLEALDY-IVYTFCNENEALLAISNEPgsFHVAIVEVSTSNSNGS--FKFLETAK-DLPTIMTSNIHCLNTMMKC 106
                         7999999****************.***************999889***************7..67777766.9****9999999******* PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         + +Ga +fl Kp ++++l++
  Potri.003G087700.2 107 IALGAVEFLRKPLSEDKLRN 126
                         *****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.41E-1416134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.7E-1417161No hitNo description
PROSITE profilePS5011020.0119132IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.9E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.84E-821131No hitNo description
PROSITE profilePS5129414.044285344IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-25286342IPR009057Homeodomain-like
SuperFamilySSF466891.08E-17287344IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-24288342IPR006447Myb domain, plants
PfamPF002499.6E-8291340IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MVCTTNDLSA WKDFPKGLSV LLLDEDNSSA AEIKSKLEAL DYIVYTFCNE NEALLAISNE  60
PGSFHVAIVE VSTSNSNGSF KFLETAKDLP TIMTSNIHCL NTMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKAFNAGG SVQSESLKPV KDSIVSMLEL KESNEQQSPA SDKHPAPSTW  180
QFKQVGRLLD DGDCQDHINC SVEKDSGEQE GESKSVETTC AMSQETLKAG HPPCFIETVI  240
KETGDLTDGA KSENNIHPNP QNKDSLNHSN DVASDLHTSN GTRANRKKMK VDWTPELHKK  300
FVQVVEKLGV DQAIPSRVLE LMKVESLTRH NVASHLQKYR MRRRPILPKE DDRRWPHHRE  360
QVQRSYYPYK PIMAYPPYHS NHDLPTNPLS PMAPNRNLAQ EALSRDACGC MGLPCDATIA  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-16293341654Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.84700.0bud
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G087700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0289210.0CT028921.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454054.10.0two-component response regulator-like APRR2 isoform X2
RefseqXP_024454055.10.0two-component response regulator-like APRR2 isoform X3
SwissprotQ6LA431e-123APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A2K2B3V30.0A0A2K2B3V3_POPTR; Uncharacterized protein
TrEMBLA0A3N7ESN10.0A0A3N7ESN1_POPTR; Uncharacterized protein
STRINGPOPTR_0003s08600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.51e-126ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]