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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G087700.10 | ||||||||
Common Name | POPTR_0003s08600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARR-B | ||||||||
Protein Properties | Length: 550aa MW: 61437.4 Da PI: 6.2051 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 82.3 | 5.3e-26 | 309 | 362 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k +++WtpeLH++Fv++ve+L G ++A+P+++lelmkv++Lt+++v+SHLQkYR+ Potri.003G087700.10 309 KMKVDWTPELHKKFVQVVEKL-GVDQAIPSRVLELMKVESLTRHNVASHLQKYRM 362 5689*****************.********************************7 PP | |||||||
2 | Response_reg | 25.9 | 5e-10 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl+ d++++ + +++ le +y +v ++ + eal + ++ +++ ++ ++ ++++G+ +k +++++ +lp i+ + +++ + Potri.003G087700.10 20 VLLLDEDNSSAAEIKSKLEALDY-IVYTFCNENEALLAISNEPgsFHVAIVEVSTSNSNGS--FKFLETAK-DLPTIMTSNIHCLNTMMK 105 79999999***************.***************999889***************7..67777766.9****9999999****** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 ++ +Ga +fl Kp ++++l++ Potri.003G087700.10 106 CIALGAVEFLRKPLSEDKLRN 126 ******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 7.12E-14 | 16 | 134 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 4.5E-14 | 17 | 168 | No hit | No description |
PROSITE profile | PS50110 | 20.01 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.3E-6 | 20 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.88E-8 | 21 | 131 | No hit | No description |
PROSITE profile | PS51294 | 14.044 | 306 | 365 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-25 | 307 | 363 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.42E-17 | 308 | 365 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.6E-24 | 309 | 363 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-7 | 312 | 361 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MVCTTNDLSA WKDFPKGLSV LLLDEDNSSA AEIKSKLEAL DYIVYTFCNE NEALLAISNE 60 PGSFHVAIVE VSTSNSNGSF KFLETAKDLP TIMTSNIHCL NTMMKCIALG AVEFLRKPLS 120 EDKLRNIWQH VVHKAFNAGG SVQSESLKPV KDSIVSMLEL KVELEENEDE NMEKTENASL 180 AQESNEQQSP ASDKHPAPST WQFKQVGRLL DDGDCQDHIN CSVEKDSGEQ EGESKSVETT 240 CAMSQETLKA GHPPCFIETV IKETGDLTDG AKSENNIHPN PQNKDSLNHS NDVASDLHTS 300 NGTRANRKKM KVDWTPELHK KFVQVVEKLG VDQAIPSRVL ELMKVESLTR HNVASHLQKY 360 RMRRRPILPK EDDRRWPHHR EQVQRSYYPY KPIMAYPPYH SNHDLPTNPV YPMWGATGSH 420 TASMHTWGTP SYLPWPPTEI WHRKPYLGMH ADAWGCPVMP PLHSPFSSFP QNASGFQSAS 480 MVDNSCGMPQ KPFDLQPAEE VINKVVKEVI NKPWLPLPIG LKPPSTDSVL AELSRQGISS 540 IPPLCSNSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 7e-16 | 314 | 362 | 6 | 54 | Transcription factor LUX |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.8470 | 0.0 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G087700.10 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT028920 | 0.0 | CT028920.1 Poplar cDNA sequences. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006385611.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_024454050.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_024454051.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_024454053.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Swissprot | Q6LA43 | 1e-138 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | B9N2R7 | 0.0 | B9N2R7_POPTR; ARR-B family protein | ||||
STRING | POPTR_0003s08600.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3566 | 34 | 65 |
Representative plant | OGRP9166 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-131 | ARR-B family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G087700.10 |
Entrez Gene | 18096932 |
Publications ? help Back to Top | |||
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