PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GATA

Protein Properties

Length: 541aa MW: 60284.5 Da PI: 7.0362

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G082800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45.4	1.1e-14	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Potri.003G082800.1 7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 99************88888*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	3.4E-9	1	55	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.47E-10	5	45	No hit	No description
CDD	cd00202	6.41E-16	6	54	No hit	No description
PROSITE pattern	PS00344	0	7	32	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.1E-12	7	41	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.2	7	40	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.0E-11	7	41	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF13919	1.6E-11	282	391	IPR028020	ASX homology domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0030154	Biological Process	cell differentiation
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0005667	Cellular Component	transcription factor complex
GO:0000977	Molecular Function	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	Molecular Function	RNA polymerase II transcription factor binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	Molecular Function	chromatin binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH 60 RVSRLKSVSI SKNKEVKLLK RKPNYDNRVA LDYNQGYRKV VDEDTSNRSS SGSAISNPES 120 CAQFGSAEAS DLTGPAQSVV WDSLVPSRKR TCVNRPKPSS VEKLTKDLYT ILHEQQSSCF 180 SGSSEEDLLF DNETPMVSVE IGHGSVLIRH PSSIARDEES EASSLSVENK QYLTNEAYSH 240 PVILPVHNEN KSVNTTYPIT ETTKNLTGQG MQQEQLKRDK FPHEKVHILG SHNSPLCSID 300 LNDILNFEEF ARHLTNEEQQ QLLKYLPPLD TTKLPNSIES MFDSPQFKEN INSYQQLLSE 360 GVFDLSFSEA KTEDCKTLKR LTLSNFLKSK WVERYHLLKK CKNSNGKSFV GKGPNPDVVA 420 MSNIAGAKRS RDSPSQKFSE VKLMKSPKRI IMKATYENKE LIDNDGSCFS PRSLFALPTD 480 GSSLMLDSLH FVDESSDQDL LLDIPSNGSF AQAELFYPTN SFGQQASTSS SSIYPHLGRP 540 *

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH  60
RVSRLKSVSI SKNKEVKLLK RKPNYDNRVA LDYNQGYRKV VDEDTSNRSS SGSAISNPES  120
CAQFGSAEAS DLTGPAQSVV WDSLVPSRKR TCVNRPKPSS VEKLTKDLYT ILHEQQSSCF  180
SGSSEEDLLF DNETPMVSVE IGHGSVLIRH PSSIARDEES EASSLSVENK QYLTNEAYSH  240
PVILPVHNEN KSVNTTYPIT ETTKNLTGQG MQQEQLKRDK FPHEKVHILG SHNSPLCSID  300
LNDILNFEEF ARHLTNEEQQ QLLKYLPPLD TTKLPNSIES MFDSPQFKEN INSYQQLLSE  360
GVFDLSFSEA KTEDCKTLKR LTLSNFLKSK WVERYHLLKK CKNSNGKSFV GKGPNPDVVA  420
MSNIAGAKRS RDSPSQKFSE VKLMKSPKRI IMKATYENKE LIDNDGSCFS PRSLFALPTD  480
GSSLMLDSLH FVDESSDQDL LLDIPSNGSF AQAELFYPTN SFGQQASTSS SSIYPHLGRP  540
*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.8712	0.0	bud\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G082800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147026	0.0	EF147026.1 Populus trichocarpa clone WS01226_G08 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006385556.1	0.0	GATA transcription factor 26 isoform X1
Swissprot	Q8W4H1	1e-162	GAT26_ARATH; GATA transcription factor 26
TrEMBL	A9PFA9	0.0	A9PFA9_POPTR; Uncharacterized protein
STRING	POPTR_0003s08080.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4424	31	55
Representative plant	OGRP2749	15	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-166	GATA transcription factor 26

Link Out ? help Back to Top
Phytozome	Potri.003G082800.1
Entrez Gene	18096884

Publications ? help Back to Top
Ralph SG, et al. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. BMC Genomics, 2008. 9: p. 57 [PMID:18230180]