PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 283aa MW: 31745.3 Da PI: 8.2571

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G079300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.3	7.7e-18	95	146	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + +g+Wv+eIr p++ + r++lg+f t+e+Aa+a++ a++ ++g+ Potri.003G079300.1 95 PSYRGVRMRQ-WGKWVSEIRQPKK---KSRIWLGTFSTPEMAARAHDVAALTIKGH 146 57***998.******854...6*********************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.5E-12	95	146	IPR001471	AP2/ERF domain
CDD	cd00018	4.81E-33	95	155	No hit	No description
PROSITE profile	PS51032	22.734	96	153	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.4E-21	96	154	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.7E-32	96	154	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-37	96	159	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-10	97	108	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-10	119	135	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MPKTASLTHS SLTQQVFKKD LKMKLVANNP LFQALHHTLV IYFSSSTFSS SSSSPSAMKD 60 STKQVSQNSS KRNQDPNNYE SDKQAKRRGN AGRHPSYRGV RMRQWGKWVS EIRQPKKKSR 120 IWLGTFSTPE MAARAHDVAA LTIKGHSAHL NFPELAHEFP RPASSSPKDI QAAAALAATL 180 SCKTSQKGRE TEAEAELMLP RSLDSTLASN ETQEYSLNSP LRDDDDDTFI DLPDILQGIS 240 HQFDEFCYLS PWQPVGTETS DVGFWHHEEP SLWEYQSSRN IY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-17	88	159	6	75	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G079300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF155926	0.0	EF155926.1 Populus trichocarpa TINY-like protein (TINYL7) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002303364.1	1e-170	ethylene-responsive transcription factor ERF039
Swissprot	Q8LBQ7	7e-49	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A9PL76	1e-169	A9PL76_POPTR; TINY-like protein
STRING	POPTR_0003s07700.1	1e-169	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16750.1	2e-46	ERF family protein

Link Out ? help Back to Top
Phytozome	Potri.003G079300.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]