PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G063700.1
Common NamePOPTR_0003s06240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 705aa    MW: 77703.2 Da    PI: 8.3225
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G063700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.29.3e-09591639348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Potri.003G063700.1 591 AWTLSEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 639
                         7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.464584643IPR017930Myb domain
SuperFamilySSF466898.22E-16586648IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-13586643IPR009057Homeodomain-like
SMARTSM007172.9E-9588641IPR001005SANT/Myb domain
CDDcd116602.63E-19590640No hitNo description
PfamPF002498.6E-7591639IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
METVVEVEGN DEAKLKECGI RNSTSSLSSP KQISDPVVYK LVRLEGDGRI VPATDDELME  60
VESLLIDDKC EMHIYADPGQ TVGCISNEGS SSGIAQLESL EGLLQSRNKE ADPDKLNARL  120
EYIKEMLQKV KEEQRLRLAC GSPYCSSAYL IVDSQCCDQH DKLLHIDAKL QCEIPLQETV  180
PSLAPSLSES HFNQSGSFGE CSHSSDKLVA GGSTLSVVTT KPDFSKLKGE ICLDNLSIKE  240
LHETFKATFG RETTVKDKQW LKRRISMGLT NSCDVSVTSF IIKDNKLVKK GNGEISNCMD  300
GSYAEDPPIG NQKDLPTSLV SQLDYHQVVP EKRLENPNLD DNSGSDDHQT EQRAAKRARK  360
PTKRYIEELS EVESKESNGR LMNLAKNSGH GLISLKSHVR LVRNVPLGGR TVVTRLDSLG  420
GYGIQVPCVS RVRRSRPRKN FMALLKFNPS GMGMEATVKK ALGDHSFPPD DGKESRVLKA  480
SSTPEHVHHQ KFNPSGMGME ATLVKKALGD HSFPLDDGKE SRVLKASSTP EHVHHQFIGV  540
PEKDKQFSVM SAIGLGHNTE LKCINSSRDS DDNVVTVPTP KGGIRRKHHR AWTLSEVMKL  600
VEGVSRYGAG RWSEIKRLAF ASYSYRTSVD LKDKWRNLLK ASLAPQDNGM NSRKSTGAMP  660
IPAPILLKVR ELAEMQAQVL PNLSSTKIAG STRKNVHEKQ TGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1432438RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G063700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0292441e-105CT029244.1 Poplar cDNA sequences.
GenBankCT0295441e-105CT029544.1 Poplar cDNA sequences.
GenBankCT0295451e-105CT029545.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453597.10.0uncharacterized protein LOC7475702 isoform X1
RefseqXP_024453598.10.0uncharacterized protein LOC7475702 isoform X1
TrEMBLA0A2K2B2H60.0A0A2K2B2H6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-118TRF-like 6