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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G060400.1 | ||||||||
Common Name | POPTR_0003s05910g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | CPP | ||||||||
Protein Properties | Length: 164aa MW: 17949.2 Da PI: 6.6993 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47 | 4.9e-15 | 79 | 118 | 5 | 41 |
TCR 5 gC...nCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 gC nCk+s+Clk+YCeCfaag++C ++C+Ce+C+Nk+e Potri.003G060400.1 79 GCrrrNCKRSRCLKLYCECFAAGNYCLDTCSCENCFNKSE 118 554448*******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.6E-12 | 78 | 119 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 17.095 | 79 | 163 | IPR005172 | CRC domain |
Pfam | PF03638 | 5.2E-11 | 84 | 116 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MGDGQQESQA AVAAGSSSYQ SMSTMQTPRD SLHSIPFEQQ ATLCEGTMPS SENADIIELN 60 QMSPERNSKK AKYSTESEGC RRRNCKRSRC LKLYCECFAA GNYCLDTCSC ENCFNKSEYA 120 DAVLHMRQQI EARNPLAFAP KVVKHTTISP VNMMAGVGCF DGC* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers and at significant levels in leaves. Detected with highest levels in developing ovules and microspores, and in petals. {ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G060400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024452820.1 | 1e-83 | CRC domain-containing protein TSO1 | ||||
Swissprot | Q8L548 | 2e-29 | TCX3_ARATH; Protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | A0A3N7EUD5 | 2e-82 | A0A3N7EUD5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s05910.1 | 1e-116 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14277 | 14 | 17 | Representative plant | OGRP993 | 17 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22760.1 | 2e-31 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G060400.1 |
Entrez Gene | 7475721 |
Publications ? help Back to Top | |||
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