PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G054400.1
Common NamePOPTR_0003s05300g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 190aa    MW: 20911.4 Da    PI: 4.5895
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G054400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.7e-171666155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y+G+r++k +g Wv+eIr+p   g+++r++lg++  +e+Aa a++ a++ l+g
  Potri.003G054400.1 16 PRYRGIRQRK-WGTWVSEIREP---GQKTRIWLGSYEKPEMAAVAYDVAALHLRG 66
                        68*******9.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.46E-291675No hitNo description
PfamPF008471.6E-101666IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-301775IPR001471AP2/ERF domain
PROSITE profilePS5103222.1281774IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-201774IPR016177DNA-binding domain
SMARTSM003806.9E-341780IPR001471AP2/ERF domain
PRINTSPR003676.1E-121829IPR001471AP2/ERF domain
PRINTSPR003676.1E-125676IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEGRSRDAHG DQISTPRYRG IRQRKWGTWV SEIREPGQKT RIWLGSYEKP EMAAVAYDVA  60
ALHLRGRGAQ LNFPEMEDSL PRPASSRAED VQAAAREAAL LFSTGPVKCS DIVSCGSITS  120
DGGFGPVRVG LSPSQIQAIN EAPLDSPKMW TEYLAESLLT GEPMAMENDI GVGYSEWEEI  180
QQESIWGYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-151874663ATERF1
3gcc_A2e-151874663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G054400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454096.11e-138ethylene-responsive transcription factor ERF022-like
TrEMBLB9GX151e-136B9GX15_POPTR; Uncharacterized protein
STRINGPOPTR_0003s05300.11e-137(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.13e-47ERF family protein