PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 270aa MW: 29453.2 Da PI: 4.7597

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G050700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.2	9.6e-19	87	137	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv+eIr p++ + r++lg+f t+e+Aa+a++ a+++++g Potri.003G050700.1 87 PVYRGVRRRA-WGKWVSEIRQPRK---KSRIWLGTFPTPEMAARAHDVAALCIKG 137 68***777.******843...6*********************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	8.3E-14	87	137	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.1E-32	88	146	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.31E-21	88	146	IPR016177	DNA-binding domain
SMART	SM00380	8.5E-37	88	151	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.854	88	145	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-10	89	100	IPR001471	AP2/ERF domain
CDD	cd00018	1.55E-33	89	147	No hit	No description
PRINTS	PR00367	2.3E-10	111	127	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MVFSIEILNI AWDNRKILLT PSLPPFSSQT SPQISVPEMN EESTSSSNST CNSPPPSLAT 60 TITNKLNKQN PIQQSSRSKV RDCSKHPVYR GVRRRAWGKW VSEIRQPRKK SRIWLGTFPT 120 PEMAARAHDV AALCIKGDSA ILNFPELADS LPRPVSVMPR DIQSAAAKAA AMVEFNSPSP 180 SSSLSSSSVT VSEDVAESEE EYLSEIVELP NIEGSFDSPD QSRIEFMLFD SVDGHGWVYP 240 PLDLCGEFSD QLLGLESLIS SNLAGSVLN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-19	84	146	10	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G050700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002303301.1	1e-168	ethylene-responsive transcription factor TINY
Swissprot	Q9LYD3	5e-58	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A2K2B1R8	0.0	A0A2K2B1R8_POPTR; Uncharacterized protein
STRING	POPTR_0003s04920.1	1e-168	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	2e-52	ERF family protein

Link Out ? help Back to Top
Phytozome	Potri.003G050700.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]