PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G034200.1 | ||||||||
Common Name | POPTR_0003s02890g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 236aa MW: 25146.4 Da PI: 8.948 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.3 | 4.5e-40 | 17 | 77 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds+ntkfCyynny+lsqPr+fCk+C+ryWtkGGalrn+PvGgg+rkn k+s Potri.003G034200.1 17 EQEQLKCPRCDSNNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGALRNIPVGGGSRKNTKRS 77 57899****************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-29 | 12 | 76 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.4E-33 | 19 | 75 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.292 | 21 | 75 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 23 | 59 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MQDPSTAFHT IKPQFPEQEQ LKCPRCDSNN TKFCYYNNYN LSQPRHFCKN CKRYWTKGGA 60 LRNIPVGGGS RKNTKRSSNT KRANPDPNPD PVKPTRRVAD SSSSSATSST SGQQLAGNGN 120 QDPTRVYGVE ADPDRKILDM GGSFSSLLAS SGQFGSIFEG LDSGGSGLKM VRMGGFGEDL 180 NAGPSRNPGL DLQGSSNNNT TNDGGGESYL QGGEWGNSNN GWPGLAIYTP GSSFQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00199 | DAP | Transfer from AT1G51700 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G034200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006385334.1 | 1e-173 | dof zinc finger protein DOF3.1 | ||||
Swissprot | O82155 | 7e-46 | DOF17_ARATH; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | B9MWQ5 | 1e-171 | B9MWQ5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s02890.1 | 1e-172 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6181 | 33 | 51 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 5e-41 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G034200.1 |
Entrez Gene | 18096729 |
Publications ? help Back to Top | |||
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