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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.003G031400.1 |
| Common Name | POPTR_0003s02570g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
FAR1 |
| Protein Properties |
Length: 659aa MW: 76224 Da PI: 7.9232 |
| Description |
FAR1 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.003G031400.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FAR1 | 70.2 | 4.9e-22 | 50 | 133 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ leHnH+l
Potri.003G031400.1 50 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMVRMRLADSKRWRVLEVMLEHNHSL 133
69*****************************************9988.....99*********************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 659 aa
Download sequence Send
to blast |
MAEAGCSNER LTNGELNEKE KELDDGTEEK KEFVAPAVGM EFESYDDAYN YYNCYAKEVG 60
FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMV RMRLADSKRW 120
RVLEVMLEHN HSLGAKIYRP VKKVSTGNKR KSLSSNSDAE GRTIKLYRAL VIDSEGNGNS 180
SLNARDVMNF SELPDQLNLK RGDAQAIYNY FCRMQLTNPN FFYLMDLNDE GHLRNVFWVD 240
ARSRASCGYF GDVVYIDNTY LSSKFEIPLV AFVGTNHHSQ SVLLGCGLLA GETTESYIWL 300
FKAWITCMSG CSPQTIITDR CRTLQTAIAE AFPRAHHCFG LSHIMKRVPE KLGGLRHYDA 360
IKKAFMKAVY ETLKVIEFEV AWGFMVQRFG VGDHEWLQSL YEDRVRWAPV YLKDTVFAGM 420
SASRSGEILN PFFERYVHKQ TPLKEFLDKY ELALQKKHKE ETIADIESRS VGPALKTRCS 480
FELQLSKLYS KEIFKKFQFE VEEMYSCFST TQIHVDGPII IFLVKERVLG ESNRREIRDF 540
EVLYNRSAGE VRCICSCFNF YGYLCRHALC VLNFNGVEEI PCKYILPRWK KDYKRLYIPD 600
HSSNDVDSTD HMQWFNQLYR SALQVVEEGV ISLEHYSVAL EAFEESQNRV REVEEKQA*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
