PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G026600.1

Common Name

POPTR_0001s39520g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

BES1

Protein Properties

Length: 329aa MW: 35330.4 Da PI: 8.4827

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G026600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	214.3	3e-66	2	145	1	150
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 ++++r ptwkErEnnkrRERrRRaiaaki++GLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGtt+rkg+kp e++++ g sa++sp+ Potri.003G026600.1 2 TSGTRLPTWKERENNKRRERRRRAIAAKIFSGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTFRKGCKPVERMDILGVSATTSPC 92 5899************************************************************************************* PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsssl 150 ss++ +sp++sy++sp sssfpsp+s++ + +a+ +sl+p+l++ls++sss+ Potri.003G026600.1 93 SSYH--------PSPCASYNPSPGSSSFPSPASSSYAANANMdcNSLIPWLKNLSSASSSA 145 ........**************99888776665567********9987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	9.8E-66	3	139	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MTSGTRLPTW KERENNKRRE RRRRAIAAKI FSGLRMYGNY KLPKHCDNNE VLKALCNEAG 60 WTVEPDGTTF RKGCKPVERM DILGVSATTS PCSSYHPSPC ASYNPSPGSS SFPSPASSSY 120 AANANMDCNS LIPWLKNLSS ASSSASSSKF PHLYIHGGSI SAPVTPPLSS PTARTARIKA 180 DWEDQSIRPG WGGQHYSFLP SSTPPSPGRQ IVPDPEWFRG IRIPQGGPTS PTFSLVASNP 240 FGFKEEAFGG GGSNGGSRMW TPGQSGTCSP AIAAGSDHTA DIPMAEISDE FAFRCNATGL 300 VKPWEGERIH EECGSDDLEL TLGNSRTR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	2e-22	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	2e-22	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	2e-22	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	2e-22	6	77	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.2947	0.0	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G026600.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF145433	0.0	EF145433.1 Populus trichocarpa clone WS01124_K11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006370100.1	0.0	BES1/BZR1 homolog protein 4 isoform X2
Refseq	XP_006370101.1	0.0	BES1/BZR1 homolog protein 4 isoform X1
Swissprot	Q9ZV88	1e-140	BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBL	A9PB38	0.0	A9PB38_POPTR; Uncharacterized protein
STRING	POPTR_0001s39520.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2661	33	75
Representative plant	OGRP1595	15	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-118	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	Potri.003G026600.1
Entrez Gene	18095445

Publications ? help Back to Top
Ralph SG, et al. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. BMC Genomics, 2008. 9: p. 57 [PMID:18230180]