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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G018300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 237aa MW: 27137.1 Da PI: 4.7283 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.2 | 3.9e-10 | 4 | 90 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f kvl d+ + r+++p +++e+ g+ +s++l ++d+ g+ +++ ++ ++ vl+ GW +Fv++ gL++gD+vv+++++++ Potri.003G018300.1 4 FSKVL--RDTDVHVRFSFPTHCLEHLdfAGN--NSVDLYVKDSCGELRVIRCLKrNGVYDKPVLSMGWLKFVDDYGLRVGDMVVLHREDDH 90 56777..566666789***999966676444..799*********99999995524444559************************76553 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.9E-12 | 3 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-13 | 3 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.08E-14 | 3 | 102 | No hit | No description |
PROSITE profile | PS51375 | 6.906 | 133 | 167 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 5.5E-4 | 139 | 164 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.019 | 139 | 164 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 10.852 | 195 | 229 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 1.2E-4 | 197 | 228 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 7.1E-6 | 197 | 227 | IPR002885 | Pentatricopeptide repeat |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MQIFSKVLRD TDVHVRFSFP THCLEHLDFA GNNSVDLYVK DSCGELRVIR CLKRNGVYDK 60 PVLSMGWLKF VDDYGLRVGD MVVLHREDDH NLGSQFMIEA KRRMKLFGEE DWGEDLLRGC 120 WVLLDTCLME FLLEMDFLSM TDGYSKRNCW DETWKLFDSM SVEGNVEPEE VTMIAARSAC 180 SQKGGGIFDT MGVRDVFSWT RMVNGYAKSG ELELARMSFN EMPERNVVSW SAMIAG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12873 | 1e-143 | bud| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G018300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210344 | 0.0 | AC210344.1 Populus trichocarpa clone POP100-P10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K2B041 | 1e-174 | A0A2K2B041_POPTR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12594 | 4 | 14 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G018300.1 |