PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G010900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 122aa    MW: 13973.3 Da    PI: 10.8472
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G010900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.3e-18695188
                        EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr. 87
                        f+k+l  s +  ++r+++p k ++++   +g+   sk+  ++d +g++W+++++ rk++++   vl++GW eF+k  gLk+gD v+F+++g  
  Potri.003G010900.1  6 FEKKL--SKTDIENRMSVPMKSLDAFripKGE--HSKDFGVTDIHGKRWRFRYSTRKSDRHpkPVLSSGWIEFAKKRGLKVGDEVTFSVVGMk 94
                        88999..77777788********999765444..6789***************98888888999************************77643 PP

                        S CS
                  B3 88 s 88
                         
  Potri.003G010900.1 95 G 95
                        3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.1941107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-20294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-16394IPR015300DNA-binding pseudobarrel domain
CDDcd100171.77E-17488No hitNo description
SMARTSM010193.0E-66107IPR003340B3 DNA binding domain
PfamPF023628.5E-15696IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MPKHLFEKKL SKTDIENRMS VPMKSLDAFR IPKGEHSKDF GVTDIHGKRW RFRYSTRKSD  60
RHPKPVLSSG WIEFAKKRGL KVGDEVTFSV VGMKGAEDLE LGIQARKKIK LFGEVFWSNP  120
L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G010900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139260.0AC213926.1 Populus trichocarpa clone POP063-D18, complete sequence.
GenBankAC2141000.0AC214100.1 Populus trichocarpa clone POP063-I02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452199.16e-84putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A2K2AZW31e-82A0A2K2AZW3_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00450.12e-71(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-10related to ABI3/VP1 2