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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G260000.1 | ||||||||
Common Name | POPTR_0002s26160g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 97aa MW: 10977.2 Da PI: 7.6045 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.2 | 7.6e-08 | 6 | 52 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT +l+ +a + + + +W+ ar +g +t +++k ++q++ Potri.002G260000.1 6 SNWTSKQNKLFENALAIYDQEspdRWHNLARAVG--KTVEEVKKHYQML 52 58*****************99************8..9**********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 5.6E-6 | 4 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-4 | 6 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.14E-12 | 6 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.38E-5 | 7 | 53 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MASGSSNWTS KQNKLFENAL AIYDQESPDR WHNLARAVGK TVEEVKKHYQ MLVEDVQQIE 60 AGEIPLPNYT RRSGASNKSY HCNDDQAQRV KNLNLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-28 | 8 | 95 | 11 | 92 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.5032 | 1e-165 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G260000.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF145360 | 1e-162 | EF145360.1 Populus trichocarpa clone WS01123_L07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303127.1 | 1e-67 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 3e-31 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A9PAX0 | 3e-66 | A9PAX0_POPTR; MYB-like family protein | ||||
STRING | POPTR_0002s26160.1 | 6e-67 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 1e-33 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G260000.1 |
Entrez Gene | 7474516 |
Publications ? help Back to Top | |||
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