PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G248500.1
Common NamePOPTR_0002s24990g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 564aa    MW: 61298.3 Da    PI: 6.2009
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G248500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.8e-09368415455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Potri.002G248500.1 368 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 415
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-17362433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-10362419No hitNo description
PROSITE profilePS5088815.663364414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16364432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-6368415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10370420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MESEYFFNAG VPPQALLFEP TSTSSSMPVW QSLSSPMEMQ DNCSARRLFN SNWEKSTDHS  60
PHFESSLSSM VSSPGVSNCN VSSESFMVRE LIGNLGNIDN SNNPGEISPH SQPMLAASYI  120
TAANNSANTS CYTTPLNSPP KLNMPVMDQF SKEHLNIPSL GKPMGLNSSV AEFTADPGFA  180
ERAAKFSCFG SRSFNGRISQ LGLNNAEMAN GCNPLMGNGK LARVASSPLL KAVGSQKGNK  240
STPLQDRSEL TNSQESSVSE QIPSGEAGVK ASNELNSRKR KALSKGKAKQ SASNPPASAT  300
KDAETDDNSN TKRIKPNEGE ENENSPVKAE EEPKGSGDDI QNKANSRPPE PPKDYIHVRA  360
RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK ALMLDEIINY VQSLQRQVEF  420
LSMKLASVNT RLDFNMDTLI SKDIFQSSQP LPHPIFPLDS SAPAAIFSHQ QQQNPPLHSN  480
ISNGAVTHCS VDPLDTTGLC QTLNAQLPPL DGFTQNAHQY PTFCEDDLQT IVQMGYGQNP  540
NLETFLPQNF HGSNQVSHMK IEL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.141060.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G248500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303073.20.0transcription factor bHLH62
TrEMBLB9GQN90.0B9GQN9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s24990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-116bHLH family protein