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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G239400.3 | ||||||||
Common Name | POPTR_0002s24040g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | FAR1 | ||||||||
Protein Properties | Length: 179aa MW: 20460.3 Da PI: 10.2129 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.7 | 1.2e-25 | 11 | 102 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kfY+eYA+++GF vr+ + ++s +g++ r++ C+k+g++ ++++ +++r++ r gCka++ vk++k+gkw+vt++e++HnH+l Potri.002G239400.3 11 KFYSEYARRLGFVVRVMQRRRSGIDGRTLARRLGCNKQGFSPNNRTIvgPGPDKKPRPSAREGCKATILVKMDKSGKWVVTRFEKDHNHPL 101 6***************************************99988777778999************************************9 PP FAR1 90 a 90 + Potri.002G239400.3 102 V 102 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.7E-24 | 11 | 102 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MEFESEDAAR KFYSEYARRL GFVVRVMQRR RSGIDGRTLA RRLGCNKQGF SPNNRTIVGP 60 GPDKKPRPSA REGCKATILV KMDKSGKWVV TRFEKDHNHP LVVTASGFSS SGDKDKKIEE 120 LTKELEHQDH LCATYREKLV SFMNSIEEQT EELASKIQLI VDNVRKVESE VQNFSRRR* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G239400.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303021.1 | 1e-130 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_024451613.1 | 1e-130 | protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 6e-22 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2K2BNK6 | 1e-129 | A0A2K2BNK6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s24040.1 | 1e-130 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 4e-67 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G239400.3 |
Entrez Gene | 7462455 |
Publications ? help Back to Top | |||
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