PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G239300.3 | ||||||||
Common Name | POPTR_0002s24030g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | FAR1 | ||||||||
Protein Properties | Length: 190aa MW: 21833.7 Da PI: 5.0099 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.4 | 1.6e-25 | 78 | 168 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ +++ r+ ++tr gC+a+l++ +++ +w+vtk+ eHnH+l+ Potri.002G239300.3 78 EFYIAYGRRTGFTVRIHHNRRSRINNMVIGQDFVCSKEGFREKKYVYrKDRVLRPPPVTREGCQAMLRLALKDGITWVVTKFIAEHNHALM 168 6*****************************************998873455667999********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.1E-23 | 78 | 168 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MDSTSKQAFD LDETESCFVV ENYDENEFVD DELSENIELC MDEVDKIIEQ SSETLGSIND 60 AMEPCIGMEF KSRDDAREFY IAYGRRTGFT VRIHHNRRSR INNMVIGQDF VCSKEGFREK 120 KYVYRKDRVL RPPPVTREGC QAMLRLALKD GITWVVTKFI AEHNHALMSP SKVPWRGSAK 180 SLVSEVCFL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G239300.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303020.1 | 1e-137 | protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | A0A2K2BNM1 | 1e-136 | A0A2K2BNM1_POPTR; Uncharacterized protein | ||||
TrEMBL | B9GNH4 | 1e-136 | B9GNH4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s24030.1 | 1e-137 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-23 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G239300.3 |
Entrez Gene | 7488615 |