PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G235400.1
Common NamePOPTR_0002s23650g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 568aa    MW: 61701.6 Da    PI: 5.5916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G235400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.5e-09379426455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Potri.002G235400.1 379 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 426
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.10E-11373430No hitNo description
SuperFamilySSF474595.63E-17373444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663375425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17375444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-6379426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10381431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MEKDKLFMSE GASTAAPIWN SCSFGMEMQT DELNCSSGQL ANCFLNPNWD NLLDQSDPFE  60
SALSSIVSSP VASSVNANVI SNAGVGGDSV LIRELIGRLG NICNSGEMSP QSYINNNNNS  120
TNTSCYSTPL NSPPKLSISM MDSQMRGNLP ILGNSLVNHP SLAPFPADPG FVERAARYSC  180
FGSNNLGGLN GQFGLNESEL INRMMPRVEP GKLSRVSSNN SMKVAGSQAN VQESNKSSPQ  240
DGNLNSDKKF SRLSRPSTPE NGDSREESSV SEQIPGGELS MKSQTDANSR KRKSIPRGKA  300
KETPSPSPSA SDVKVAAEND ESSAKKSKSE DTNGSDKDSA KAMEEENGNH KQKKDNSNPP  360
EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCNKVTG KAVMLDEIIN  420
YVQSLQRQVE FLSMKMATVN PKMEINMETF LSKDIFQSRG SMPHGLYPLD SSTPAFPYGY  480
QSQQGLALQD GMSRNAESQF SMNPLNAALR RSSSMQLPAL DGFGDASHQA SAMWQDDLQS  540
VVQMGYGQNQ QQDFQGSVPP TQMKIEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288293SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G235400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301743.30.0transcription factor bHLH77
TrEMBLA0A2K2BND60.0A0A2K2BND6_POPTR; BHLH family protein
STRINGPOPTR_0002s23650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-80bHLH family protein