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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Potri.002G228700.1 |
| Common Name | POPTR_0002s21300g |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
MYB |
| Protein Properties |
Length: 482aa MW: 53381.3 Da PI: 7.2758 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.002G228700.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 51.2 | 3e-16 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT Ed +l+++vk++G g+W+++ + + + R++k+c++rw ++l
Potri.002G228700.1 18 KGPWTVAEDAILIEYVKKHGEGNWNSVQKNFRLMRCGKSCRLRWANHL 65
79******************************************9986 PP
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| 2 | Myb_DNA-binding | 53 | 7.9e-17 | 71 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g++T++E+++++++++++G++ W++ a+ ++ gRt++++k++w++
Potri.002G228700.1 71 KGSFTPDEEKIIIELHAKHGNK-WARMASQLP-GRTDNEIKNYWNT 114
799*******************.*********.***********97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009555 | Biological Process | pollen development |
| GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway |
| GO:0043068 | Biological Process | positive regulation of programmed cell death |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0090406 | Cellular Component | pollen tube |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 482 aa
Download sequence Send
to blast |
MESGQATAPK GFNQGLKKGP WTVAEDAILI EYVKKHGEGN WNSVQKNFRL MRCGKSCRLR 60
WANHLRPNLK KGSFTPDEEK IIIELHAKHG NKWARMASQL PGRTDNEIKN YWNTRMKRHQ 120
RAGLPIYPQD FQAKTAAVRF HHQEGRRTQP NSTSLSSSPY NLCFPPLDPI NSFATPLNPL 180
QNHLSPLAFY SNPSHQLKLF ANTNSNDGCL PLSLPPVSSY QQSPLSTNLF SQNPTRQAAP 240
INTPPSVLFY NDADMESNMS FTSLIMGGQV QPIGFIPSGQ TPPGPTTSWG GGACFEEASN 300
KSNNNGYSNS ETSQQGMAGN MNNSGLLDAL LQEAKTISFK GKSNSDDLLP ASNEGKRAMD 360
STVKEEGEKL WDDLSSSQSS NIWTKPSEEA ADQELNSMDD DFISLLNNFP SSEPLPEWYR 420
QSRNERNSNR MPYSGLNIVD DNRDPDVKED ASLTRASNTE AVPNRGRALV SCHWNNMPGI 480
C*
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