PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G208100.4
Common NamePOPTR_0020s00320g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 366aa    MW: 40907.8 Da    PI: 5.8433
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G208100.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.7e-07751240
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        ++r C+ +++  + l+C+ ++  lC +C  e H+       Ht++
  Potri.002G208100.4  7 QKRLCDYCNDTTALLYCRADSAKLCFSCDHEVHSTnqlfskHTRS 51
                        7899******99*********************668888888875 PP
2zf-B_box20.41.1e-065291437
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                          C+ ++  ++++fC++ ++ +C++C  e H +       H
  Potri.002G208100.4 52 LLCDACHASPVSIFCQTEHSVFCQNCDWERH-SlsslsstH 91
                        57***************************99.435555555 PP
3CCT59.88.9e-21321363143
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                         R+ a++RYkeK+ktR+++K+irYesRK++Ae R R++GrF+k 
  Potri.002G208100.4 321 RDSAISRYKEKKKTRRYSKHIRYESRKVRAEGRTRIRGRFAKM 363
                         899**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.623653IPR000315B-box-type zinc finger
SMARTSM003366.9E-13653IPR000315B-box-type zinc finger
PfamPF006432.1E-5751IPR000315B-box-type zinc finger
CDDcd000211.33E-5953No hitNo description
PROSITE profilePS501199.7834996IPR000315B-box-type zinc finger
PfamPF006434.2E-55296IPR000315B-box-type zinc finger
CDDcd000211.56E-45382No hitNo description
SMARTSM003360.265496IPR000315B-box-type zinc finger
PfamPF062035.7E-15321363IPR010402CCT domain
PROSITE profilePS5101714.396321363IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MKPRQQQKRL CDYCNDTTAL LYCRADSAKL CFSCDHEVHS TNQLFSKHTR SLLCDACHAS  60
PVSIFCQTEH SVFCQNCDWE RHSLSSLSST HIRRPIEGFT GCPSGNELMT ILGFEDLGLK  120
KSLFFSEESD GFLGSELDDG CSDLFLWDSP AVCIDDLIVS SDSGSNFQTL GVPPLPKNRN  180
AACGQHKEEI LCQLRELVRL KPDPYGNADI DPANILQSLD ADPQPPNLNT IGDPGAFTSY  240
KENLPDWLAD YGEAANQVLF LSTLPSSNFE ESCAVPDKEF NIIGSASHVH DDHAAEPQHL  300
TIETLPALPN VVTHELNSQE RDSAISRYKE KKKTRRYSKH IRYESRKVRA EGRTRIRGRF  360
AKMDH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G208100.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006389672.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLU7E1V50.0U7E1V5_POPTR; Uncharacterized protein
STRINGPOPTR_0020s00320.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.12e-92B-box type zinc finger protein with CCT domain