PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G199300.1 | ||||||||
Common Name | POPTR_0002s20030g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | FAR1 | ||||||||
Protein Properties | Length: 760aa MW: 86585.6 Da PI: 6.3434 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.7 | 1.3e-20 | 62 | 155 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnH Potri.002G199300.1 62 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQIKASDDGKLQRNRKSSRCGCQAYMRIVKRAdfdVPEWRITGFNNIHNH 152 6***************999887455667********************9*******************98887676789************ PP FAR1 88 ela 90 el Potri.002G199300.1 153 ELL 155 *96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-17 | 62 | 155 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.9E-25 | 278 | 369 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.817 | 540 | 588 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.3E-7 | 561 | 586 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.7E-6 | 563 | 590 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 760 aa Download sequence Send to blast |
MEIMSGLTDV VKETSESGMD SCPDDIGTVE EVPEDTILSR QTSVNLVPFI GQRFVSQDAA 60 YEFYCSFAKQ CGFSIRRHRT RGKDGVGRGI TRRDFTCHRG GYPQIKASDD GKLQRNRKSS 120 RCGCQAYMRI VKRADFDVPE WRITGFNNIH NHELLKSNEV QLLPAYCTMS ADEKSRICMY 180 AKAGMSVRQM LRLMELEKGV KLGCLPFTEI DVRNLLQSFR NVNRDNDAID LLEMCKYKKD 240 NDPNFKYNFH IDANKRLEQI AWSYASSIQS YEAFGDSIIF DTTHRLDTYD MILGIWIGVD 300 NHGTNCFFGC VLLRDENTGS FSWALKTFLE FMDGKAPETI LTDQNMWLKE AISVEMPGTK 360 HAFCIWHIIA KFSDWFSVPL GSQYDKWKAE FHRLYGLQSV EDFEIGWRNM VDAYGMHGNK 420 HIVSLFALRT FWALPYLRCC FFAGMTSTFQ SESINAYIQR VLNAQSLDNF VEQVAAAVEF 480 KEPGPRQKMQ RKVHKISLKM GSPIESHAAT VLTPYAFNKL QEELVLAPQY ASLMVDESYF 540 IVRIHTDMDG GCKVIWIPHD EFISCSCHLF EFSGILCRHV LRVLSTNNCF HIPDRYLPVR 600 WRDVSTSLTK PFQTFTSEEH AEKVQLLQSM VSTLLTESIE TEERLDVACD QVAEVLSHIK 660 EFPRPGHGCN DIGYNSPSDS LILPEVEDSD GFVHGFADGN SHEPLTLGKM KERRLRDGIN 720 IFRKRRRCSV PCCGQYGHDA TDCPMMEGGD LNGDGLGFL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 722 | 726 | RKRRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G199300.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302746.2 | 0.0 | protein FAR1-RELATED SEQUENCE 11 | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | B9GSF4 | 0.0 | B9GSF4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s20030.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF594 | 30 | 113 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G199300.1 |
Entrez Gene | 7478858 |
Publications ? help Back to Top | |||
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