PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB

Protein Properties

Length: 329aa MW: 37093.6 Da PI: 5.1925

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G191800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.5e-17	58	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl Potri.002G191800.1 58 KGPWTIEEDSLLAHYITIHGEGHWNSAARCAGLKRTGKSCRLRWLNYL 105 79********************************************97 PP
2	Myb_DNA-binding	48.1	2.7e-15	111	154	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Potri.002G191800.1 111 RGNITLQEQLLILQLHSRWGNR-WSKIAQMLP-GRTDNEIKNYWRT 154 7899****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.7	53	105	IPR017930	Myb domain
SuperFamily	SSF46689	9.36E-30	54	152	IPR009057	Homeodomain-like
SMART	SM00717	5.0E-11	57	107	IPR001005	SANT/Myb domain
Pfam	PF00249	7.1E-14	58	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-20	59	112	IPR009057	Homeodomain-like
CDD	cd00167	2.27E-9	60	105	No hit	No description
PROSITE profile	PS51294	22.568	106	160	IPR017930	Myb domain
SMART	SM00717	9.5E-14	110	158	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-14	111	154	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-21	113	159	IPR009057	Homeodomain-like
CDD	cd00167	3.85E-7	131	154	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MTNLSSLPSL SCIPTQNSNS NCASLAKFFI LEKEMDAQAR KHGYAGTLSE DQGMGIRKGP 60 WTIEEDSLLA HYITIHGEGH WNSAARCAGL KRTGKSCRLR WLNYLRPNVR RGNITLQEQL 120 LILQLHSRWG NRWSKIAQML PGRTDNEIKN YWRTRVQKQA KQLKCDVNSK QFRDTMRYVW 180 IPQLIQKIGA ESESPMDQPT ISPPTYYSSQ IDIPAAASES GSDLIDPNFM PDISVSSTLS 240 DSLDAQVSPW SDLTDYQNPP CGQYYSDCMQ NGSGLCPEND SGSWGWCQDG VDMQGMEQER 300 YGFIGGGDSL DQSLWNEENI WFLQQQLM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	3e-23	58	159	4	104	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	4e-23	30	160	4	128	MYB TRANSFORMING PROTEIN
1mse_C	2e-23	58	159	4	104	C-Myb DNA-Binding Domain
1msf_C	2e-23	58	159	4	104	C-Myb DNA-Binding Domain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G191800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002302787.1	0.0	transcription factor MYB108
TrEMBL	A0A3N7EJQ8	0.0	A0A3N7EJQ8_POPTR; Uncharacterized protein
STRING	POPTR_0002s19250.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF875	34	125
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	1e-75	myb domain protein 78

Link Out ? help Back to Top
Phytozome	Potri.002G191800.1