PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.002G178700.1 | ||||||||
Common Name | PtVNS10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 382aa MW: 43549.2 Da PI: 5.9326 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.2 | 2.3e-51 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPt+eel+++yL+kkv+ +k++l evi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+ g+r+nrat++g+Wkatg+ Potri.002G178700.1 15 VPPGFRFHPTEEELLDYYLRKKVSYEKIDL-EVIRDVDLNKLEPWDIQErcKIGTaPQNDWYFFSHKDKKYPAGTRTNRATAAGFWKATGR 104 69****************************.99**************962433333556******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk ++ +g+ vg++ktLvfykgrap+g+k+dW+mheyrl Potri.002G178700.1 105 DKVIYG-TGKRVGMRKTLVFYKGRAPHGQKSDWIMHEYRL 143 *****9.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-58 | 9 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.1 | 15 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-27 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 382 aa Download sequence Send to blast |
MTENMSISVN GQSQVPPGFR FHPTEEELLD YYLRKKVSYE KIDLEVIRDV DLNKLEPWDI 60 QERCKIGTAP QNDWYFFSHK DKKYPAGTRT NRATAAGFWK ATGRDKVIYG TGKRVGMRKT 120 LVFYKGRAPH GQKSDWIMHE YRLDDNPSET NVSNVMGEAA QEDGWVVCRI FKKKNLNKTL 180 DRAMSSSPIT ADTRNQTLSS CNEGSLDQML HYMGSTCKEE NEADNSARYL WPIDTAINHV 240 HHDNRFMELP SLESPNSTSS LNFYQSMITE NEGSITNQVS YPLDSGLNNW VALDSLVASQ 300 INGQAETSRQ SACFPNDPTM TYCTPTDLHH DLQFPTLRSS FSFPSNRSYH ETQDYNSEID 360 LWNFSSRSSS DPQWHLPNTS V* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-50 | 12 | 175 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-50 | 12 | 175 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-50 | 12 | 175 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-50 | 12 | 175 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-50 | 12 | 175 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 8e-50 | 12 | 175 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 8e-50 | 12 | 175 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 8e-50 | 12 | 175 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 8e-50 | 12 | 175 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 8e-50 | 12 | 175 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 8e-50 | 12 | 175 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 8e-50 | 12 | 175 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 9e-50 | 12 | 175 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 9e-50 | 12 | 175 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in various aboveground tissues undergoing thickening of the lignified secondary wall such as anthers, filaments of stamens, the base of carpels, styles, the boundaries between siliques and pedicels, the midrib of leaf veins, and inflorescence stems, specifically in interfascicular fibers (sclerenchyma), cells differentiating into vascular vessels, and xylary fibers (secondary xylem). {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.002G178700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB599941 | 0.0 | AB599941.1 Populus trichocarpa PtVNS10 mRNA for transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024450691.1 | 0.0 | NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 1e-134 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | F1T115 | 0.0 | F1T115_POPTR; NAC family protein | ||||
STRING | POPTR_0002s17950.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3031 | 33 | 74 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-127 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.002G178700.1 |