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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G173900.1 | ||||||||
Common Name | POPTR_0002s17460g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 286aa MW: 32183.2 Da PI: 9.4512 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl Potri.002G173900.1 14 RGPWTPREDALLTEYIQAHGEGHWRSLPKKSGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54 | 4e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++Ed+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l Potri.002G173900.1 67 RGNITPDEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNHWNTHL 112 7999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.641 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.14E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.56E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.182 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.57E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGRAPCCSKV GLRRGPWTPR EDALLTEYIQ AHGEGHWRSL PKKSGLLRCG KSCRLRWMNY 60 LRPDIKRGNI TPDEDDLIIR MHSLLGNRWS LIAGRLPGRT DNEIKNHWNT HLSKRLRSQG 120 TDPNTHKKLA EPGKREVRRR TSNSDKNTSN KKQSKSKAKP VPAEKHKVHL PKAVRFASLS 180 LPRNDSFASS TTTSLSPSQG RDQGYCFGTE LAVDVSWSNF KDCDNGVAFF VGDVDLDNGS 240 DLECQSLLPT TDTLEKLYEE YLQVLNTNDH QDQVELNSFA ESLLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 12 | 116 | 5 | 108 | B-MYB |
1h8a_C | 3e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G173900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302644.1 | 0.0 | myb-related protein 308 | ||||
TrEMBL | B9GR37 | 0.0 | B9GR37_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s17460.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 8e-68 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G173900.1 |
Entrez Gene | 7497264 |