PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 178aa MW: 19396.7 Da PI: 6.5253

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G172600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.7	6.1e-18	20	68	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f +e+Aaka++ a+ +l+g Potri.002G172600.1 20 YRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAYCLKG 68 9**887.******843...6***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	7.3E-12	18	68	IPR001471	AP2/ERF domain
SMART	SM00380	7.7E-36	19	82	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.591	19	76	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.7E-31	19	78	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-21	19	77	IPR016177	DNA-binding domain
PRINTS	PR00367	9.6E-13	20	31	IPR001471	AP2/ERF domain
CDD	cd00018	3.50E-30	20	77	No hit	No description
PRINTS	PR00367	9.6E-13	58	78	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MTRLQIPDTT RGSGTRHPAY RGVRKRRWGK WVSEIREPRK KSRIWLGSFP VPEMAAKAYD 60 VAAYCLKGRK AQLNFPEEAD DLPIPSTCTA RDIQAAAAKA AHSVLIPMKK SSETNNDGGG 120 DGEVAGDDFW GEIELPELLL SNSGYSWDSG GWNTTLASDN STWQPDGEGL QPSMACL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-19	11	78	6	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G172600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148541	0.0	EF148541.1 Populus trichocarpa x Populus deltoides clone WS0133_J24 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006387557.2	1e-123	LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF023
Swissprot	Q1ECI2	2e-60	ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBL	U7E046	1e-128	U7E046_POPTR; Uncharacterized protein
STRING	POPTR_0855s00200.1	1e-129	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6375	28	47
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01250.1	3e-58	ERF family protein

Link Out ? help Back to Top
Phytozome	Potri.002G172600.1
Entrez Gene	18109281

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]