PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G167400.1
Common NamePOPTR_0002s16900g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 265aa    MW: 30342.8 Da    PI: 5.3038
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G167400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-20106155255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +grW+AeIrdp+    r +r +lg+++taeeAa  +++a+ +++g
  Potri.002G167400.1 106 RYRGVRQRP-WGRWAAEIRDPY----RrTRLWLGTYDTAEEAAMVYDQAAIRIKG 155
                         8********.**********75....34***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.78E-31105162No hitNo description
PROSITE profilePS5103223.736106163IPR001471AP2/ERF domain
SMARTSM003804.6E-38106169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-30106163IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21106163IPR016177DNA-binding domain
PfamPF008471.2E-13106155IPR001471AP2/ERF domain
PRINTSPR003677.8E-11107118IPR001471AP2/ERF domain
PRINTSPR003677.8E-11129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MNRFSTKYTE HKTVTNKLVK WEDSKATRIV RISVTDGNAT DSSGDEKEES KRHHPRVKKH  60
INEIRITSCG SDRAAEDAKK SSKVVSRQQV VKKISRDQCS YPGGKRYRGV RQRPWGRWAA  120
EIRDPYRRTR LWLGTYDTAE EAAMVYDQAA IRIKGPDAQT NFTQPPEPGP ESQVAVQSDC  180
CWRIQTQEEV VQEEIIKVGE DDECLVTDPL CLKEFWDFEN PAPIFFEECS VPDTVLREDY  240
ADISVHLDGD FGSCLWDVDK YFEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20104162362ATERF1
3gcc_A3e-20104162362ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G167400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080940.0AC208094.1 Populus trichocarpa clone JGIACSB09-L10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301396.10.0ethylene-responsive transcription factor CRF5 isoform X1
TrEMBLA0A3N7G3J30.0A0A3N7G3J3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s16900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.17e-45cytokinin response factor 4