PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G159300.5
Common NamePOPTR_0002s16070g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family BES1
Protein Properties Length: 705aa    MW: 78674.8 Da    PI: 5.4246
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G159300.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822147.89.3e-46752141133
              DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaagssas 87 
                         gg++r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +gs+p   +++a+ ss+s
  Potri.002G159300.5  75 GGARRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSRPAgGTSAAVTSSSS 165
                         6899*****************************************************************9888999999733333333333 PP

              DUF822  88 ..aspesslq.sslkssalaspvesysaspksssfpspssldsislasa 133
                           +s++++   ++ +s   ++ ve + +s+k + +p ps +d   ++++
  Potri.002G159300.5 166 hlVSQQTPPAsLRGVSPGYQTSVEYSTCSMKGVFMPNPSPYDLSASTQP 214
                         348888888878999**************************98876644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056879.5E-3977208IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.36E-184261700IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.2E-201264696IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.6E-107268685IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.2E-74299313IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.2E-74320338IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.2E-74342363IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060346354IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008421.5E-7425434IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007503.2E-74435457IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.2E-74508527IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.2E-74542558IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.2E-74559570IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.2E-74577600IPR001554Glycoside hydrolase, family 14
PRINTSPR008421.5E-7580590IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007503.2E-74617639IPR001554Glycoside hydrolase, family 14
PRINTSPR008421.5E-7668682IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008421.5E-7683697IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MATDIQKLIG TSEEDDDEEM DMDVKEEDDE DEENGGKNIA AQIMAGGGGG MASNNSDNQF  60
QHQQQFQEQV TTPAGGARRS RPLEEKERTK LRERHRRAIT ARILAGLRRH GNYNLRVRAD  120
INDVIAALAR EAGWVVLPDG TTFPSRSQGS RPAGGTSAAV TSSSSHLVSQ QTPPASLRGV  180
SPGYQTSVEY STCSMKGVFM PNPSPYDLSA STQPQIPAVV GEGGEQTESN LHIGGSMDII  240
NDKQIVDIPP IPKLPERDFA GTPFIPVYVM LPLGVINMKC ELVDPDDLLK QLKVLKSANV  300
DGIMVDCWWG IVEAHTPQEY NWSGYSRLFQ MVRELKLKLQ VVMSFHECGG NVGDDVCIPL  360
PHWVAEIGRS NPDIFFTDRE GRRNPECLSW GIDKERVLRG RTAVEVYFDY MRSFRAEFDE  420
CFADGIISMV EVGLGPCGEL RYPSCPVKHG WRYPGIGEFQ CYDQYLLKSL KKTAEARGHP  480
FWARGPDNAG FYNSQPHETG FFCDGGDYDG YYGRFFLNWY TRILVDHGDR VLSLAKLAFE  540
GTQIAVKLSG IHWWYKTASH AAELTAGFYN PCNRDGYAAI AEMLKKHKAA LNFSCSESRM  600
GDQQVDFAEA LADPEGLVWQ VLNAAWEVGI PIASENALPC HDRVTYNKIL DNAKPLNDPD  660
GKHFLSFTHL RLSPLLMERQ TFVEFERFVK RMHGKVLEQH AIIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdr_A1e-15526469411443Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.118660.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G159300.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302585.20.0beta-amylase 7 isoform X3
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A3N7EQQ60.0A0A3N7EQQ6_POPTR; Beta-amylase
STRINGPOPTR_0002s16070.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]