PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G159300.1
Common NamePOPTR_0002s16070g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family BES1
Protein Properties Length: 708aa    MW: 78932.1 Da    PI: 5.2702
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G159300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221441.4e-44752191133
              DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr........kgskpl.eeaeaa 82 
                         gg++r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++        +gs+p   +++a+
  Potri.002G159300.1  75 GGARRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsqvlisQGSRPAgGTSAAV 165
                         6899*****************************************************************9889999999999997333333 PP

              DUF822  83 gssas..aspesslq.sslkssalaspvesysaspksssfpspssldsislasa 133
                          ss+s  +s++++   ++ +s   ++ ve + +s+k + +p ps +d   ++++
  Potri.002G159300.1 166 TSSSShlVSQQTPPAsLRGVSPGYQTSVEYSTCSMKGVFMPNPSPYDLSASTQP 219
                         3333334888888777889999************************98876644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.2E-3877212IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.18E-184266701IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.1E-201269702IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.6E-107273690IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.3E-74304318IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.3E-74325343IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.3E-74347368IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060351359IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008426.0E-8430439IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007503.3E-74440462IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.3E-74513532IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.3E-74547563IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.3E-74564575IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.3E-74582605IPR001554Glycoside hydrolase, family 14
PRINTSPR008426.0E-8585595IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007503.3E-74622644IPR001554Glycoside hydrolase, family 14
PRINTSPR008426.0E-8673687IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008426.0E-8688702IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MATDIQKLIG TSEEDDDEEM DMDVKEEDDE DEENGGKNIA AQIMAGGGGG MASNNSDNQF  60
QHQQQFQEQV TTPAGGARRS RPLEEKERTK LRERHRRAIT ARILAGLRRH GNYNLRVRAD  120
INDVIAALAR EAGWVVLPDG TTFPSRSQVL ISQGSRPAGG TSAAVTSSSS HLVSQQTPPA  180
SLRGVSPGYQ TSVEYSTCSM KGVFMPNPSP YDLSASTQPQ IPAVVGEGGE QTESNLHIGG  240
SMDIINDKQI VDIPPIPKLP ERDFAGTPFI PVYVMLPLGV INMKCELVDP DDLLKQLKVL  300
KSANVDGIMV DCWWGIVEAH TPQEYNWSGY SRLFQMVREL KLKLQVVMSF HECGGNVGDD  360
VCIPLPHWVA EIGRSNPDIF FTDREGRRNP ECLSWGIDKE RVLRGRTAVE VYFDYMRSFR  420
AEFDECFADG IISMVEVGLG PCGELRYPSC PVKHGWRYPG IGEFQCYDQY LLKSLKKTAE  480
ARGHPFWARG PDNAGFYNSQ PHETGFFCDG GDYDGYYGRF FLNWYTRILV DHGDRVLSLA  540
KLAFEGTQIA VKLSGIHWWY KTASHAAELT AGFYNPCNRD GYAAIAEMLK KHKAALNFSC  600
SESRMGDQQV DFAEALADPE GLVWQVLNAA WEVGIPIASE NALPCHDRVT YNKILDNAKP  660
LNDPDGKHFL SFTHLRLSPL LMERQTFVEF ERFVKRMHGE AVVELRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdr_A1e-15526970011444Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.118660.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G159300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450668.10.0beta-amylase 7 isoform X1
RefseqXP_024450669.10.0beta-amylase 7 isoform X1
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A3N7G3E90.0A0A3N7G3E9_POPTR; Beta-amylase
STRINGPOPTR_0002s16070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108833339
Representative plantOGRP4345912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]