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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G154700.1 | ||||||||
Common Name | POPTR_0002s15610g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 821aa MW: 89297.3 Da PI: 6.2784 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.4 | 7.9e-21 | 117 | 172 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k Potri.002G154700.1 117 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 172 688999***********************************************999 PP | |||||||
2 | START | 194.6 | 4.7e-61 | 326 | 551 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela++a++elvk+++ +ep+W s e++n + +l++f++ + + +ea+r++g+v+ ++ lve+l+d++ +W e+++ + Potri.002G154700.1 326 ELALAAMDELVKMVQTDEPLWIGSFeggrEILNHEGYLRTFTPCIGmkpsgFVSEASRETGMVIINSLALVETLMDSN-RWAEMFPcmiaR 415 5899******************9999****************999899******************************.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksngh 161 +t++vi sg g lqlm+ael +lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ + + +v +++lpSg+++++++ng+ Potri.002G154700.1 416 TSTTDVIASGmggtrnGSLQLMQAELHVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRDTSGaPPTFVNCRRLPSGCVVQDMPNGY 506 ****************************************************************999999********************* PP EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 skvtwveh+ +++r++h+l+r++++sg+ +ga++w atlqrqce+ Potri.002G154700.1 507 SKVTWVEHAQYDERQIHQLYRPVISSGMGFGAQRWIATLQRQCEC 551 *******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.07E-20 | 100 | 174 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 104 | 174 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.216 | 114 | 174 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-17 | 115 | 178 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.03E-18 | 116 | 174 | No hit | No description |
Pfam | PF00046 | 2.2E-18 | 117 | 172 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 149 | 172 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.275 | 317 | 554 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.3E-32 | 319 | 551 | No hit | No description |
CDD | cd08875 | 9.57E-122 | 321 | 550 | No hit | No description |
Pfam | PF01852 | 4.3E-53 | 326 | 551 | IPR002913 | START domain |
SMART | SM00234 | 6.5E-44 | 326 | 551 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.65E-22 | 579 | 813 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 821 aa Download sequence Send to blast |
MSFGGFLENT SPGGGGARIV ADILYNNNNN MPTGAIAQTR LVSPSITKSM FNSPGLSLAL 60 QQPNIDGQGD ITRMAENFET SVGRRSREEE HESRSGSDNM DGASGDDQDA ADNPPRKKRY 120 HRHTPQQIQE LEALFKECPH PDEKQRLELS RRLCLETRQV KFWFQNRRTQ MKTQLERHEN 180 SLLRQDNDKL RAENMSIRDA MRNPSCSNCG GPAIIGDMSL EEQHLRIENA RLKDELDRVC 240 ALAGKFLGRP ISSLASSLSP PTNSSLELAV GSNGFAGLST IATTLPLGPH FEGGISGALS 300 MVTQTRLATA GVTGIDRSVE RSMFLELALA AMDELVKMVQ TDEPLWIGSF EGGREILNHE 360 GYLRTFTPCI GMKPSGFVSE ASRETGMVII NSLALVETLM DSNRWAEMFP CMIARTSTTD 420 VIASGMGGTR NGSLQLMQAE LHVLSPLVPV REVNFLRFCK QHAEGVWAVV DVSIDTIRDT 480 SGAPPTFVNC RRLPSGCVVQ DMPNGYSKVT WVEHAQYDER QIHQLYRPVI SSGMGFGAQR 540 WIATLQRQCE CLAILLSSNV PSRDHTAITT SGRRSMLKLA QRMTDNFCAG VCASTVHKWN 600 KLNAGNVDED VRVMTRKSVD DPGEPPGIVL SAATSVWLPV SPQRLFDFLR NERLRSEWDI 660 LSNGGPMQEM AHIAKGQDHG NCVSLLRASA MNANQSSMLI LQETCIDAAG SLVVYAPVDT 720 PAMHVVMNGG DSAYVALLPS GFAIVPDGPG SRDPPSTNGG PTANNVGGQE RVSGSLLTVA 780 FQILVNSLPT AKLTVESVET VNNLISCTVQ KIKAALQCES * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G154700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301331.2 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A385JHT9 | 0.0 | A0A385JHT9_POPTO; Homeodomain protein | ||||
TrEMBL | B9GPV9 | 0.0 | B9GPV9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s15610.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G154700.1 |
Entrez Gene | 7461746 |
Publications ? help Back to Top | |||
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