PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G154000.1
Common NamePOPTR_0002s15530g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 454aa    MW: 51242.2 Da    PI: 6.3838
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G154000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.71.1e-40151432127
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         p+GfrFhPt eel+++yL +k++g+++e    ++ev+++k+ePwdLp k  +k++++ wyfF++r+ k+++ k +nr tk+g+Wk+t ++k
  Potri.002G154000.1  15 PVGFRFHPTHEELINHYLVPKTRGDNVEDLLLMAEVNLCKHEPWDLPdKsIMKSDDQAWYFFCRRELKNSNRKCSNRRTKAGFWKSTCQEK 105
                         89************************999888**************96447778999********************************** PP

                 NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                         ++++k +++++g++ktLvf+++  pk+++t W+++ey 
  Potri.002G154000.1 106 PIKTKhTKKVIGIRKTLVFHEKAGPKAKRTGWIIDEYD 143
                         ***9967778***************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-4410164IPR003441NAC domain
PROSITE profilePS5100544.06514164IPR003441NAC domain
PfamPF023651.1E-2315143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MANPRSSVQL QLMNPVGFRF HPTHEELINH YLVPKTRGDN VEDLLLMAEV NLCKHEPWDL  60
PDKSIMKSDD QAWYFFCRRE LKNSNRKCSN RRTKAGFWKS TCQEKPIKTK HTKKVIGIRK  120
TLVFHEKAGP KAKRTGWIID EYDNITDSSL SKEGQYVLCR LKKKPDEKTK KGEQNHHMTA  180
VSDSDAEPSQ SMASNSESQN GSAMTVNSAF DASEIGYHVA TYNFETPNSN ELMNNSDPQV  240
SELNHYMASD SRNQNSNKVK SNSAYAVSGS LHSMSSNSKT LYWNQPTVGY CEGGKSHYKA  300
FDPETQISNN MIMPINEKSL MAYEKWLMAP DLKNQESPSQ PEGECGPSVV IPSLFINQST  360
NDSEPRSQMA SEFINRNADK EIDISDFDER SSLTETPPDF LNQNPCKKTD MSTLEEGYSS  420
NSTTSISDNN LADVALPEVI RKKLEKLEKF LEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-291116414165NO APICAL MERISTEM PROTEIN
1ut4_B4e-291116414165NO APICAL MERISTEM PROTEIN
1ut7_A4e-291116414165NO APICAL MERISTEM PROTEIN
1ut7_B4e-291116414165NO APICAL MERISTEM PROTEIN
4dul_A4e-291116414165NAC domain-containing protein 19
4dul_B4e-291116414165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G154000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826730.0AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301326.10.0NAC domain-containing protein 14
TrEMBLB9GPV30.0B9GPV3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s15530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2821533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.25e-42NAC 014