 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.002G152200.1 |
Common Name | POPTR_0002s15360g |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
TCP |
Protein Properties |
Length: 349aa MW: 37346.7 Da PI: 10.0167 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.002G152200.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 117.3 | 1.9e-36 | 80 | 195 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssasec.e 74
k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt +++s+s +
Potri.002G152200.1 80 LKRPSTKDRHTKVEGRGRRIRMPAACAARIFQLTRELGYKSDGETIRWLLEHAEPAIIAATGTgtvpaiamsvngtlkipiTTNSSSGLgQ 170
6899***********************************************************4444444444444444332222212221 PP
TCP 75 aesssssasnsssg..................k 89
+++ + + +
Potri.002G152200.1 171 PNATK--------NrkrpanseyvdvndtvsvS 195
11111........12222222344444444431 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MASMQKQELG EDEDMRTVDL RINSRELSNI RARPTNRKDC NDMSVALKEE PSTEERSPTP 60 PLGVMPLAAV SVPLTTVTPL KRPSTKDRHT KVEGRGRRIR MPAACAARIF QLTRELGYKS 120 DGETIRWLLE HAEPAIIAAT GTGTVPAIAM SVNGTLKIPI TTNSSSGLGQ PNATKNRKRP 180 ANSEYVDVND TVSVSASLAP VTTQQPQSQP QLPPQPQQTV AAVPQGLVPM WAIPSNAVVP 240 GAFFMVPSIA GPSNQPQIFT FPAAATPLIN ISARPISSFV SSMQSNMAVA VPVSGSMTAK 300 GISMMAPSSS SACTVSTTST TTNRTPQMLR DFSLEIYDKQ ELQFMSRS*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}. |