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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.002G143300.1 |
Common Name | POPTR_0002s14430g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
bHLH |
Protein Properties |
Length: 485aa MW: 52715.6 Da PI: 8.6153 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.002G143300.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 50 | 5.3e-16 | 297 | 343 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq
Potri.002G143300.1 297 VHNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 343
6*************************8.....7******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 485 aa
Download sequence Send
to blast |
MSHQCVPSWE LDDNPTTAPK VSLRSHSNSG APYMPMLNYE VAELTWENGQ LAMHGLGQPR 60 VPAKPIASTS PSKYTWDKPR ASGTLESIVN LATCIPQCNK QTFDNSGSDH DFVPWFNHHR 120 ASASATMTMD ALVPCSKRSD QERTTRVIDS SPAGLGTDCV VGCSTRVGSC SAPTATQNEV 180 GLLTRKREKV ARVPVPAEWS RDQSVNRGAT FSKKDSQQVT VDSCERELGV GFTSTTSFGS 240 QENTSSGTKP CTKTNTADEN DSVCHSRPQR EAGDEDDKKK GNGKSSVSNR RSRAAAVHNQ 300 SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVQMVS RMNMQPMMLP 360 MALQQQLQMS MMAPISMGMA GMGMGMGMGM GMGVVDMNTL AARSNITGVS PVLHPTAFMP 420 MTTWDGSNSH ERLPTAAPSA TVMPDPLSAF LACQSQPMTM DAYSRMASMY QQLHQQSPAS 480 NSKS*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 301 | 306 | ERKRRD |
2 | 302 | 307 | RKRRDK |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help
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Source |
Description |
UniProt | Required during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |