PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G125400.1
Common NamePOPTR_0002s12710g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 457aa    MW: 49705.6 Da    PI: 9.8496
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G125400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.22.3e-15378426553
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                         +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+  e+ 
  Potri.002G125400.1 378 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQAEMM 426
                         79****************************************8866554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.3E-14374438IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.53376427IPR004827Basic-leucine zipper domain
PfamPF001703.1E-13378427IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.0E-15378427No hitNo description
CDDcd147071.05E-27378432No hitNo description
SuperFamilySSF579594.06E-11378427No hitNo description
PROSITE patternPS000360381396IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010255Biological Processglucose mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MGTNFNFKNF PNDPSDAVGC RPPGNSPLTR QSSIYSLTFD ELQNTMGGSL GKDFGSMNMD  60
ELLKNIWSAE ETQTMATATS TVVEEGGGLQ RQGSLTLPRT LSQRTVDEVW KDMSKEYVIN  120
GTSAGAANNV PQRQPTLGEM TLEEFLLRAG VAREDTQVAP KVNTNGGFFG DLSRSANNSL  180
AIGFQQNRGV GLNNDNTNQI SLQSSNLPLN VNGVRSNQAQ VQQQQQIFPK QPNMGYVTQP  240
NNDNTNQISL QSSNLPLNVN GVRSNQAQVQ QQQQQQIFPK QPNMGYVTQM PLQSGPGIRG  300
GMLGIGDQGI DSGLMQGGGM GVVGLGGIAT GSPANQLSSD GIGKSNGDTS SVSPVPYVFR  360
ESVRGRRPGG AVEKVVERRQ RRMIKNRESA ARSRARKQAY TMELEAEVAK LKEENEELRK  420
KQAEMMEIQK NQVAEMMNMQ QGGKKRCLRR TQTGPW*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00186DAPTransfer from AT1G45249Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G125400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT6271400.0KT627140.1 Populus x jrtyschensis isolate 17F-pj25(3)-2 abscisic acid responsive element-binding protein 2 (ABF2) gene, partial cds.
GenBankKT6271420.0KT627142.1 Populus x jrtyschensis isolate 17F-pj25(4)-2 abscisic acid responsive element-binding protein 2 (ABF2) gene, partial cds.
GenBankKT6271440.0KT627144.1 Populus x jrtyschensis isolate 17F-pj25-2 abscisic acid responsive element-binding protein 2 (ABF2) gene, partial cds.
GenBankKT6271460.0KT627146.1 Populus x jrtyschensis isolate 17F-pj33(7)-2 abscisic acid responsive element-binding protein 2 (ABF2) gene, partial cds.
GenBankKT6271480.0KT627148.1 Populus x jrtyschensis isolate 17F-pj33(8)-2 abscisic acid responsive element-binding protein 2 (ABF2) gene, partial cds.
GenBankKT6271500.0KT627150.1 Populus x jrtyschensis isolate 17F-pj33(9)-2 abscisic acid responsive element-binding protein 2 (ABF2) gene, partial cds.
GenBankKT6271520.0KT627152.1 Populus x jrtyschensis isolate 17F-pj33(12)-2 abscisic acid responsive element-binding protein 2 (ABF2) gene, partial cds.
GenBankKT6271540.0KT627154.1 Populus x jrtyschensis isolate 17F-pj33-2 abscisic acid responsive element-binding protein 2 (ABF2) gene, partial cds.
GenBankKT6283410.0KT628341.1 Populus nigra isolate 17F-pn31(11)-2 abscisic acid responsive element-binding protein 2 (ABF2) gene, partial cds.
GenBankKT6283430.0KT628343.1 Populus nigra isolate 17F-pn37(2)-2 abscisic acid responsive element-binding protein 2 (ABF2) gene, partial cds.
GenBankKT6283450.0KT628345.1 Populus nigra isolate 17F-pn37(3)-2 abscisic acid responsive element-binding protein 2 (ABF2) gene, partial cds.
GenBankKT6283470.0KT628347.1 Populus nigra isolate 17F-pn37(7)-2 abscisic acid responsive element-binding protein 2 (ABF2) gene, partial cds.
GenBankKT6283490.0KT628349.1 Populus nigra isolate 17F-pn37(8)-2 abscisic acid responsive element-binding protein 2 (ABF2) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302435.10.0bZIP transcription factor TRAB1
SwissprotQ9M7Q41e-130AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBLB9GNV50.0B9GNV5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s12710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19623481
Representative plantOGRP39841024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G45249.11e-101abscisic acid responsive elements-binding factor 2
Publications ? help Back to Top
  1. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  2. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]