PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G119400.1 | ||||||||
Common Name | POPTR_0002s12020g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 209aa MW: 22516.6 Da PI: 8.1518 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.4 | 6.2e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C++ Cvl+ ++ p++q +++ +++k+FG+s +++l++a+pe +r+++++sl++eA+ r+ +Pv+G+vg++++++++ Potri.002G119400.1 2 SCNGCRVLRKGCSETCVLRSCLhwitnPEAQGNATLFLAKFFGRSDLMSLISAVPEAQRPALFQSLLFEACGRTVNPVNGVVGLLWSGNWH 92 6****************************************************************************************** PP DUF260 87 leqlkaelall 97 ++q+++e++l Potri.002G119400.1 93 MCQEAVETVLS 103 *****998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.946 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.8E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCVLR SCLHWITNPE AQGNATLFLA KFFGRSDLMS LISAVPEAQR 60 PALFQSLLFE ACGRTVNPVN GVVGLLWSGN WHMCQEAVET VLSGGALQPL PGILTGVLAP 120 NCDESSDRFS AAAYAVHNMA RNQSRSFAKE NNNEVVSDHR VNLCLARGKG GRDKRGRDAV 180 SFYTGGESET ISFESSGGDK KRLLNLFV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G119400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301153.3 | 1e-153 | LOB domain-containing protein 39 | ||||
Swissprot | Q9SN23 | 2e-63 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
Swissprot | Q9SZE8 | 2e-63 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A2K2BHK8 | 1e-152 | A0A2K2BHK8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s12020.1 | 1e-152 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 1e-65 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G119400.1 |
Entrez Gene | 7462849 |