PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G113700.1
Common NamePOPTR_0002s11440g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 354aa    MW: 39444.3 Da    PI: 5.7102
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G113700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21.1e-141470148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT........TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg........kgRtlkqcksrwqkyl 48
                        +g+W++eEd +l+ +++q+G+g +W + ++++         ++R++k+c++rw++yl
  Potri.002G113700.1 14 KGPWSPEEDAKLKSYIEQHGTGgNWIALPQKIDigvvsesgLKRCGKSCRLRWLNYL 70
                        79*****************************************************97 PP
2Myb_DNA-binding37.55.5e-1277119246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Potri.002G113700.1  77 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 119
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.172970IPR017930Myb domain
SuperFamilySSF466894.3E-2511117IPR009057Homeodomain-like
SMARTSM007176.1E-111372IPR001005SANT/Myb domain
PfamPF002491.2E-131470IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-231577IPR009057Homeodomain-like
CDDcd001672.31E-81670No hitNo description
PROSITE profilePS5129421.66671125IPR017930Myb domain
SMARTSM007174.8E-1175123IPR001005SANT/Myb domain
PfamPF002491.3E-1077119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2378125IPR009057Homeodomain-like
CDDcd001672.81E-879121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIDIGVV SESGLKRCGK  60
SCRLRWLNYL RPNIKHGGFS EEEDNIICSL YISIGSRWSI IAAQLPGRTD NDIKNYWNTR  120
LKKKLLGKQR KEQQARRSSG LKQEMKRGNG NPVVPADNNN QNPYWPELPI LAPIPYSNHE  180
PHFNDHASIR KLLIKLGGKF SDDDQVNHNA MNPQFPADVS YTQQLYDDQS INVSSSAPME  240
ETLDDTDTQF AQTQYDIDGA AGLQMLQGQS SFPAGLEQMV SSNPPRLDGL EFLLGDDMVN  300
NRIRTAYGTE SMIDCGEMTS LIFPPGASNC EGIIQQRLLQ ECAFDEPRYP GPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-24141257108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G113700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347134e-52KM034713.1 Jatropha curcas clone JcMYB093 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450763.10.0transcription factor RAX3 isoform X1
TrEMBLB9GNK50.0B9GNK5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11440.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-75myb domain protein 84