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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.002G113300.1 |
Common Name | KNOX, POPTR_0002s11400g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
TALE |
Protein Properties |
Length: 369aa MW: 42459.4 Da PI: 6.3824 |
Description |
TALE family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.002G113300.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 28.2 | 3.2e-09 | 295 | 330 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55
+k +yps++e+ LA+ +gL+++q+ +WF N+R ++
Potri.002G113300.1 295 YKWPYPSETEKVALAETTGLDQKQINNWFINQRKRH 330
5679*****************************885 PP
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2 | ELK | 38.1 | 3.2e-13 | 250 | 271 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK++LlrKYsgyLgsLkqE+s
Potri.002G113300.1 250 ELKNHLLRKYSGYLGSLKQELS 271
9*******************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0001708 | Biological Process | cell fate specification |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010051 | Biological Process | xylem and phloem pattern formation |
GO:0010089 | Biological Process | xylem development |
GO:0005634 | Cellular Component | nucleus |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 369 aa
Download sequence Send
to blast |
MEDYNQMSEN TTPRGNFLYA SQLLAPNSSP YGRTSSGSTV SNQQTQMPLN PFHLQSNDQC 60 FQSDTHPIVK TEASTSHAQK FHYPLLRGYQ TINQQQQGSE SSSEVEAIKA KIIAHPQYSN 120 LMEAYMDCQK VGAPPEVVAR LAAARQEFES RQRSFITSRD NSKDPELDQF MEAYYDMLVK 180 YREELTRPIQ EAMDFMRRIE TQLNMICHGP LRIFNSDDKS EGVGSSEDDQ DNSGGETELP 240 EIDPRAEDRE LKNHLLRKYS GYLGSLKQEL SKKKKKGKLP KEARQKLLSW WELHYKWPYP 300 SETEKVALAE TTGLDQKQIN NWFINQRKRH WKPSEDMQFM VMDGLHPQNA ALYMDGHYMG 360 DGHYRLGP*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed only in the stems. |
Functional Description ? help
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Source |
Description |
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FJ807482 | 0.0 | FJ807482.1 Populus trichocarpa KNOX transcription factor (KNOX) mRNA, complete cds. |