PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GATA

Protein Properties

Length: 291aa MW: 31465.8 Da PI: 6.3671

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G110900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	53.1	4.3e-17	201	237	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt + Tp++Rrgp+g+++LCnaCGl+++ +g+ Potri.002G110900.1 201 CTHCGTNSksTPMMRRGPSGPRSLCNACGLFWANRGT 237 *****99**********************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	15.373	69	104	IPR010399	Tify domain
SMART	SM00979	2.9E-12	69	104	IPR010399	Tify domain
Pfam	PF06200	1.3E-12	72	103	IPR010399	Tify domain
Pfam	PF06203	1.1E-15	133	175	IPR010402	CCT domain
PROSITE profile	PS51017	12.451	133	175	IPR010402	CCT domain
PROSITE profile	PS50114	9.684	195	244	IPR000679	Zinc finger, GATA-type
SMART	SM00401	3.6E-14	195	248	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	5.23E-12	197	245	No hit	No description
Gene3D	G3DSA:3.30.50.10	3.1E-15	199	241	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.04E-15	200	244	No hit	No description
Pfam	PF00320	9.6E-15	201	237	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	201	228	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0030154	Biological Process	cell differentiation
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0005667	Cellular Component	transcription factor complex
GO:0000977	Molecular Function	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	Molecular Function	RNA polymerase II transcription factor binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	Molecular Function	chromatin binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MYTPSQPMNV HNQIVSPGVD DDGAPADPID HHHHIHYEDG TPAVVVEDVS PDSVYVTAGV 60 AASELGIQPS DGSSQLTLTF RGQVYVFDSV TPDKVQAVLL LLGGCELTPG LELTPQNQRG 120 VGEYPPRCTQ PQRAASLSRF RQKRKERCFD KKVRYGVRQE VALRMQRNKG QFTSAKKSEG 180 GYGWDGGQDS AQDDSQHETS CTHCGTNSKS TPMMRRGPSG PRSLCNACGL FWANRGTLRD 240 HSKKALEHSV APIDLGETEA NESDSVPAIN THNNPVTYAN GGDTALITDH *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.1091	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269\|PubMed:10945256, ECO:0000269\|PubMed:14966217}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00451	DAP	Transfer from AT4G24470	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G110900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU277145	1e-157	GU277145.1 Populus balsamifera isolate HAY07 haplotype B GATA type zinc finger protein ZIM gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002302364.1	0.0	GATA transcription factor 25 isoform X1
Swissprot	Q9LRH6	4e-89	GAT25_ARATH; GATA transcription factor 25
TrEMBL	B9GN86	0.0	B9GN86_POPTR; Uncharacterized protein
STRING	POPTR_0002s11150.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68
Representative plant	OGRP831	16	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	5e-85	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	Potri.002G110900.1
Entrez Gene	7461845

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]