PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G110800.2
Common NamePOPTR_0002s11140g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 273aa    MW: 30103.6 Da    PI: 5.0988
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G110800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.89.5e-16125161135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Potri.002G110800.2 125 CKHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 161
                         *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101712.6795395IPR010402CCT domain
PfamPF062037.7E-155394IPR010402CCT domain
SMARTSM004013.0E-10119177IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.8E-11120169No hitNo description
Gene3DG3DSA:3.30.50.101.4E-14123166IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.03E-15124168No hitNo description
PROSITE patternPS003440125152IPR000679Zinc finger, GATA-type
PfamPF003201.2E-13125161IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MNDIIGFDCQ VQAVLLLLGG RDIPTAVPTI EVQYDQNNRG VGDTPKRSNL SRRIASLVRF  60
REKRKERCFD KKIRYTVRKE VAQRMHRKNG QFASIKENPG DSSWDSGQSC LQDGTPLSET  120
VVRRCKHCGV SENNTPAMRR GPAGPRTLCN ACGLMWANKG TLRDLSKGGR NLPVDQIEPE  180
TLIEVKPSII EGEFSGNQDE HGTAKDLSKA VSEGFNNHSI NPDEVFQEAT EDITNTLPMG  240
VIHSSGDDDE QEPLVELANP SDTELDIPAN FD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14247DTPKRS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G110800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302363.20.0GATA transcription factor 24 isoform X2
SwissprotQ8GXL71e-59GAT24_ARATH; GATA transcription factor 24
TrEMBLB9GN850.0B9GN85_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11140.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.27e-64ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]