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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.002G110800.1 |
| Common Name | POPTR_0002s11140g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
GATA |
| Protein Properties |
Length: 361aa MW: 39278.4 Da PI: 4.6148 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.002G110800.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 48.3 | 1.4e-15 | 213 | 249 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
C +Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+
Potri.002G110800.1 213 CKHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 249
*******99*************************997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding |
| GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| GO:0003682 | Molecular Function | chromatin binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MAAANPQPLQ ARPYKDHRTR APIQIEDDDD GEYEDGDGMD DMEEEAAVAQ VNSGVSVAEH 60
NHGAGGGGGG VVIASRTSEL TLSFEGEVYV FPAVTPEKVQ AVLLLLGGRD IPTAVPTIEV 120
QYDQNNRGVG DTPKRSNLSR RIASLVRFRE KRKERCFDKK IRYTVRKEVA QRMHRKNGQF 180
ASIKENPGDS SWDSGQSCLQ DGTPLSETVV RRCKHCGVSE NNTPAMRRGP AGPRTLCNAC 240
GLMWANKGTL RDLSKGGRNL PVDQIEPETL IEVKPSIIEG EFSGNQDEHG TAKDLSKAVS 300
EGFNNHSINP DEVFQEATED ITNTLPMGVI HSSGDDDEQE PLVELANPSD TELDIPANFD 360
*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
