PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G106500.1
Common NamePOPTR_0002s10670g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 678aa    MW: 71450.7 Da    PI: 6.7975
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G106500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.4e-09207251144
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                         r++W++ Ed  l+ av++lG g+W++I r      Rt+ q+  rw
  Potri.002G106500.1 207 RKPWSEAEDMELIAAVQKLGEGNWASIVRGEFkGDRTASQLSQRW 251
                         789************************875444689999998888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.271202259IPR017930Myb domain
SuperFamilySSF466895.96E-12203257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-12203256IPR009057Homeodomain-like
SMARTSM007179.3E-9206257IPR001005SANT/Myb domain
PfamPF002494.2E-7207251IPR001005SANT/Myb domain
CDDcd116602.69E-12208256No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MIEKSKKNKK GVISEEDVST LLQRYTATTL LALLQEVAQF DGAKIDWNAL VKKTSTGISN  60
AREYQMLWRH LAYRHVLPEK FDDGAHPLDD DDSDLESELE AFPSVTSEAS TEAAACVKVL  120
IASGLPSDST HPNNTTVEAP LTINIPNGRS LRATSENSQS DVMRGVNIRV PVSVQKLSLP  180
AVMSCPASEV YDANGSGSGT FPPRRKRKPW SEAEDMELIA AVQKLGEGNW ASIVRGEFKG  240
DRTASQLSQR WAIIRKRHGN LNVGTVSSAP QLSETQRAAR DAVKMALDPH PAAKSLIASS  300
AGTTSTKTPN NCASPTITAE ASPAQHQSQQ RTMMTKSSSI WPVGPAAKSQ VMLAKASEKS  360
ILSSDPVRAA AVAAGARIAT QSDAASLLKA AQAKNAVHIM PTGSSSIKSS MTGGISTHLD  420
VNPNTRFISS GMATAPTTTR PPASGPCPGL PKATSPPPQM KASSSTAQHT QSTPVTSFNA  480
QSEQTNSVLA KATVLPPQMK ASSMTTQNTL STPITSSTPS EQTNAESSPK QGIVTIKDTK  540
AFGSQEVANG QVQRDGAHVS SEHVQEVKAA LTNQEAELKS QVAALESSNG SPKLIMNESG  600
LVNVTGNQVD GSQNADDNKM TCSPIKEAEN QSAVQENDEN QSVSERQADL PSSVSNESCI  660
KVDSISKTEA SDGMMDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202208PRRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G106500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302346.10.0mucin-5AC isoform X1
TrEMBLB9GN480.0B9GN48_POPTR; Uncharacterized protein
STRINGPOPTR_0002s10670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Representative plantOGRP59231520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.15e-67MYB_related family protein