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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G102900.1 | ||||||||
Common Name | POPTR_0002s10330g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 263aa MW: 27919.9 Da PI: 7.6957 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.3 | 1.3e-31 | 58 | 112 | 2 | 57 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +++rY+eC+kNhA+ +Ggha+DGCgEfm++ g+egt +alkCaAC+CHRnFHR+e+ Potri.002G102900.1 58 SSIRYRECQKNHAVGIGGHALDGCGEFMAA-GDEGTLDALKCAACNCHRNFHRKES 112 5789*************************9.999********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.5E-29 | 60 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-22 | 61 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.5E-29 | 61 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.207 | 62 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.61E-22 | 185 | 260 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.7E-34 | 186 | 261 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.3E-26 | 199 | 255 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MEFDEHEDQE EEMTGMAVMP PGYDSISNSV AARSKIGPAG GGGEGASTTT ANTNTRKSSI 60 RYRECQKNHA VGIGGHALDG CGEFMAAGDE GTLDALKCAA CNCHRNFHRK ESGGGGGEVI 120 LYHGHHHQQQ PQFSPYYRAP PPTGYLHHLT PTPQSRPLAL PAASGGGAAA AAGYSREEED 180 VSNPSSSGGG GGGGGSSSKK RHRTKFTQEQ KEKMLAFAES LGWRIQKHDE AAVEQFCAET 240 GVKRHVLKVW MHNNKHTLGK KP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-28 | 198 | 257 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.11992 | 1e-125 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G102900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302329.1 | 0.0 | zinc-finger homeodomain protein 2 | ||||
Swissprot | Q6YXH5 | 4e-77 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | B9GV22 | 0.0 | B9GV22_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s10330.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 5e-69 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G102900.1 |
Entrez Gene | 7467187 |
Publications ? help Back to Top | |||
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