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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.002G098200.1 |
Common Name | POPTR_0002s09840g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
C2H2 |
Protein Properties |
Length: 274aa MW: 30606.9 Da PI: 8.5536 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.002G098200.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 17 | 1.6e-05 | 117 | 136 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++C+ C k+F+r nL+ H+
Potri.002G098200.1 117 FSCHVCFKTFNRYNNLQMHL 136
89*****************6 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MEPSEISINS CLIASSSTNH NDIEPLDLFP GTSHSSRGPI PFLSSLINSP EAPFSENPKA 60 IGDEDMDADV TMALRIGLPD YSGYSSINQN VKGNVNVTAK QYWIPTPEQI LIGFTHFSCH 120 VCFKTFNRYN NLQMHLWGHG SQYRRGHESL KGTQPRAMTG IPCFCCAEGC KNNIEHPRAK 180 PLKDFRTLQT HYKRKHGLKP FMCRKCGKFL AVKGDWRTHE KNCGKRWLCV CGSDFKHKRS 240 LKDHIKSFGL GHGPFPPSFD GVELLDDASS LPI*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Developing ovules and young seeds. {ECO:0000269|PubMed:11782451}. |
Uniprot | TISSUE SPECIFICITY: Restricted to the endothelium, the innermost cell layer of the seed coat and detected to a lesser extent in the other cell layers of the testa. {ECO:0000269|PubMed:11782451}. |
Functional Description ? help
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Source |
Description |
UniProt | May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}. |